Dca39848.1
Annotation
- 3-exons
- f-1
- sp|Q2QV06_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g14460#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold4330)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca39848.1 |
5 |
384 |
391 |
43.47 |
380 |
41 |
1e-84
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QV06_ORYSJ |
1016 |
1427 |
1429 |
28.83 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca39848.1 |
190 |
367 |
391 |
17.9 |
178 |
40 |
4e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0627900-01 |
49 |
226 |
230 |
77.39 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4330 |
Augustus |
mRNA |
4006 |
5520 |
. |
- |
. |
ID=Dca39848.1;Parent=Dca39848 |
| scaffold4330 |
Augustus |
exon |
4006 |
4640 |
. |
- |
. |
ID=Dca39848.1.exon1;Parent=Dca39848.1 |
| scaffold4330 |
Augustus |
exon |
4872 |
5196 |
. |
- |
. |
ID=Dca39848.1.exon2;Parent=Dca39848.1 |
| scaffold4330 |
Augustus |
exon |
5305 |
5520 |
. |
- |
. |
ID=Dca39848.1.exon3;Parent=Dca39848.1 |
