Carnation DB

Dca42606.1

Annotation

7-exons
f-1
sp|B9ID35_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_824910#GO:0003677;GO:0003899#2F0P0C
AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase Rpb6 | chr5:21104679-21105796 FORWARD LENGTH=144
Repeat List (scaffold48)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42606.1	128	272	272	40.07	145	75	3e-55
Target_name	Start	End	Length	Cov(%)
sp\|B9ID35_POPTR	1	143	143	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42606.1	128	272	272	39.33	145	74	4e-50
Target_name	Start	End	Length	Cov(%)
AT5G51940.1	1	144	144	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold48	Augus-PASA	mRNA	117440	121844	.	-	.	ID=Dca42606.1;Parent=Dca42606
scaffold48	Augus-PASA	exon	117440	117509	.	-	.	ID=Dca42606.1.exon1;Parent=Dca42606.1
scaffold48	Augus-PASA	exon	117615	117682	.	-	.	ID=Dca42606.1.exon2;Parent=Dca42606.1
scaffold48	Augus-PASA	exon	117975	118026	.	-	.	ID=Dca42606.1.exon3;Parent=Dca42606.1
scaffold48	Augus-PASA	exon	118126	118298	.	-	.	ID=Dca42606.1.exon4;Parent=Dca42606.1
scaffold48	Augus-PASA	exon	118386	118419	.	-	.	ID=Dca42606.1.exon5;Parent=Dca42606.1
scaffold48	Augustus	exon	119291	119358	.	-	.	ID=Dca42606.1.exon6;Parent=Dca42606.1
scaffold48	Augustus	exon	121491	121844	.	-	.	ID=Dca42606.1.exon7;Parent=Dca42606.1