Carnation DB

Dca42788.1

Annotation

10-exons
f-1
sp|F6H4G3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_07s0031g02780#unknown#0F0P0C
AT5G08720.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2841536-2845335 REVERSE LENGTH=719
Repeat List (scaffold4827)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42788.1	81	729	732	63.93	649	72	0
Target_name	Start	End	Length	Cov(%)
sp\|F6H4G3_VITVI	86	731	735	87.89

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42788.1	15	729	732	63.25	715	63	0
Target_name	Start	End	Length	Cov(%)
AT5G08720.1	3	714	719	99.02

seqname	source	feature	start	end	score	strand	frame	group
scaffold4827	Augustus	mRNA	39093	43668	.	+	.	ID=Dca42788.1;Parent=Dca42788
scaffold4827	Augustus	exon	39093	39481	.	+	.	ID=Dca42788.1.exon1;Parent=Dca42788.1
scaffold4827	Augustus	exon	40321	40441	.	+	.	ID=Dca42788.1.exon2;Parent=Dca42788.1
scaffold4827	Augustus	exon	40740	40825	.	+	.	ID=Dca42788.1.exon3;Parent=Dca42788.1
scaffold4827	Augustus	exon	41205	41613	.	+	.	ID=Dca42788.1.exon4;Parent=Dca42788.1
scaffold4827	Augustus	exon	41717	41817	.	+	.	ID=Dca42788.1.exon5;Parent=Dca42788.1
scaffold4827	Augustus	exon	41926	41992	.	+	.	ID=Dca42788.1.exon6;Parent=Dca42788.1
scaffold4827	Augustus	exon	42093	42320	.	+	.	ID=Dca42788.1.exon7;Parent=Dca42788.1
scaffold4827	Augustus	exon	42631	43113	.	+	.	ID=Dca42788.1.exon8;Parent=Dca42788.1
scaffold4827	Augustus	exon	43236	43308	.	+	.	ID=Dca42788.1.exon9;Parent=Dca42788.1
scaffold4827	Augustus	exon	43427	43668	.	+	.	ID=Dca42788.1.exon10;Parent=Dca42788.1