Dca42807.1
Annotation
- 4-exons
- f-1
- sp|B9GPC4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_552015#GO:0005198#1F0P0C
- Os08t0156700-01 Similar to VAP27.
- Repeat List (scaffold483)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42807.1 |
1 |
143 |
143 |
52.44 |
143 |
44 |
2e-29
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9GPC4_POPTR |
71 |
241 |
241 |
70.95 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42807.1 |
1 |
139 |
143 |
46.15 |
139 |
40 |
3e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0156700-01 |
77 |
240 |
244 |
67.21 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold483 |
Augus-PASA |
mRNA |
56470 |
57951 |
. |
- |
. |
ID=Dca42807.1;Parent=Dca42807 |
| scaffold483 |
Augus-PASA |
exon |
56470 |
56580 |
. |
- |
. |
ID=Dca42807.1.exon1;Parent=Dca42807.1 |
| scaffold483 |
Augus-PASA |
exon |
57396 |
57437 |
. |
- |
. |
ID=Dca42807.1.exon2;Parent=Dca42807.1 |
| scaffold483 |
Augus-PASA |
exon |
57540 |
57707 |
. |
- |
. |
ID=Dca42807.1.exon3;Parent=Dca42807.1 |
| scaffold483 |
Augustus |
exon |
57841 |
57951 |
. |
- |
. |
ID=Dca42807.1.exon4;Parent=Dca42807.1 |
