Carnation DB

Dca4423.1

Annotation

12-exons
f-628
sp|A9PF19_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_815929#GO:0016021;GO:0006810#0F1P1C
Os09t0508900-01 Similar to cDNA clone:001-044-E12, full insert sequence.
Repeat List (scaffold1166)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4423.1	25	206	206	54.36	182	62	2e-64
Target_name	Start	End	Length	Cov(%)
sp\|B9S0S2_RICCO	79	260	267	68.16

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4423.1	17	205	206	52.91	189	58	5e-53
Target_name	Start	End	Length	Cov(%)
AT1G54540.1	45	231	239	78.24

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1166	Augustus	mRNA	56123	61796	.	+	.	ID=Dca4423.1;Parent=Dca4423
scaffold1166	Augustus	exon	56123	56741	.	+	.	ID=Dca4423.1.exon1;Parent=Dca4423.1
scaffold1166	Augustus	exon	58245	58333	.	+	.	ID=Dca4423.1.exon2;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	58459	58572	.	+	.	ID=Dca4423.1.exon3;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	58850	58924	.	+	.	ID=Dca4423.1.exon4;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	59045	59175	.	+	.	ID=Dca4423.1.exon5;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	59392	59446	.	+	.	ID=Dca4423.1.exon6;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	59932	60084	.	+	.	ID=Dca4423.1.exon7;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	60193	60261	.	+	.	ID=Dca4423.1.exon8;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	60349	60456	.	+	.	ID=Dca4423.1.exon9;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	60966	61034	.	+	.	ID=Dca4423.1.exon10;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	61401	61455	.	+	.	ID=Dca4423.1.exon11;Parent=Dca4423.1
scaffold1166	Augus-PASA	exon	61606	61796	.	+	.	ID=Dca4423.1.exon12;Parent=Dca4423.1