Dca4489.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold11691)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca4489.1 |
411 |
789 |
789 |
31.68 |
379 |
58 |
1e-135
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
543 |
968 |
1050 |
40.57 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca4489.1 |
400 |
518 |
789 |
6.84 |
119 |
46 |
3e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
872 |
987 |
1401 |
8.27 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold11691 |
Augustus |
mRNA |
1 |
3972 |
. |
- |
. |
ID=Dca4489.1;Parent=Dca4489 |
| scaffold11691 |
Augustus |
exon |
1 |
795 |
. |
- |
. |
ID=Dca4489.1.exon1;Parent=Dca4489.1 |
| scaffold11691 |
Augustus |
exon |
997 |
1459 |
. |
- |
. |
ID=Dca4489.1.exon2;Parent=Dca4489.1 |
| scaffold11691 |
Augustus |
exon |
2862 |
3972 |
. |
- |
. |
ID=Dca4489.1.exon3;Parent=Dca4489.1 |
