Carnation DB

Dca45143.1

Annotation

5-exons
f-1
sp|A2I5E5_BETVU#Retrotransposon protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
Repeat List (scaffold5264)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45143.1	331	496	496	23.58	166	71	5e-64
Target_name	Start	End	Length	Cov(%)
sp\|A2I5E5_BETVU	792	954	1501	10.85

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45143.1	332	473	496	11.89	142	42	3e-25
Target_name	Start	End	Length	Cov(%)
Os08t0202300-03	253	394	591	24.02

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5264	Augustus	mRNA	2317	7911	.	+	.	ID=Dca45143.1;Parent=Dca45143
scaffold5264	Augustus	exon	2317	2841	.	+	.	ID=Dca45143.1.exon1;Parent=Dca45143.1
scaffold5264	Augustus	exon	2917	3073	.	+	.	ID=Dca45143.1.exon2;Parent=Dca45143.1
scaffold5264	Augustus	exon	3244	3483	.	+	.	ID=Dca45143.1.exon3;Parent=Dca45143.1
scaffold5264	Augustus	exon	5728	5769	.	+	.	ID=Dca45143.1.exon4;Parent=Dca45143.1
scaffold5264	Augustus	exon	7385	7911	.	+	.	ID=Dca45143.1.exon5;Parent=Dca45143.1