Carnation DB

Dca45344.1

Annotation

2-exons
f-1
sp|Q7XDW3_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g31220#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold530)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45344.1	1	377	388	55.15	377	56	8e-123
Target_name	Start	End	Length	Cov(%)
sp\|Q7XDW3_ORYSJ	977	1360	1361	28.21

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45344.1	181	362	388	16.49	182	35	9e-24
Target_name	Start	End	Length	Cov(%)
Os08t0125300-01	1224	1406	1428	12.81

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold530	Augustus	mRNA	130215	131615	.	+	.	ID=Dca45344.1;Parent=Dca45344
scaffold530	Augustus	exon	130215	130755	.	+	.	ID=Dca45344.1.exon1;Parent=Dca45344.1
scaffold530	Augustus	exon	130990	131615	.	+	.	ID=Dca45344.1.exon2;Parent=Dca45344.1
scaffold530	Augustus	mRNA	130383	131615	.	+	.	ID=Dca45344.2;Parent=Dca45344
scaffold530	Augustus	exon	130383	130755	.	+	.	ID=Dca45344.2.exon1;Parent=Dca45344.2
scaffold530	Augustus	exon	130990	131615	.	+	.	ID=Dca45344.2.exon2;Parent=Dca45344.2