Carnation DB

Dca45397.1

Annotation

6-exons
f-1
sp|Q2R0G3_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g42650#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
Repeat List (scaffold5316)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45397.1	7	835	904	50.33	829	49	0
Target_name	Start	End	Length	Cov(%)
sp\|Q2R0G3_ORYSJ	690	1618	1709	54.35

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45397.1	199	835	904	28.2	637	38	2e-127
Target_name	Start	End	Length	Cov(%)
Os04t0191000-01	628	1262	1539	41.26

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5316	Augustus	mRNA	16563	21105	.	-	.	ID=Dca45397.1;Parent=Dca45397
scaffold5316	Augustus	exon	16563	16960	.	-	.	ID=Dca45397.1.exon1;Parent=Dca45397.1
scaffold5316	Augustus	exon	17086	18250	.	-	.	ID=Dca45397.1.exon2;Parent=Dca45397.1
scaffold5316	Augustus	exon	18350	19302	.	-	.	ID=Dca45397.1.exon3;Parent=Dca45397.1
scaffold5316	Augustus	exon	19426	19701	.	-	.	ID=Dca45397.1.exon4;Parent=Dca45397.1
scaffold5316	Augustus	exon	19854	20139	.	-	.	ID=Dca45397.1.exon5;Parent=Dca45397.1
scaffold5316	Augustus	exon	21073	21105	.	-	.	ID=Dca45397.1.exon6;Parent=Dca45397.1