Dca45402.1
Annotation
- 2-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold5319)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45402.1 |
5 |
530 |
537 |
38.36 |
526 |
37 |
3e-89
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
69 |
599 |
1248 |
42.54 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45402.1 |
374 |
531 |
537 |
13.4 |
158 |
46 |
5e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
535 |
693 |
1428 |
11.13 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5319 |
Augustus |
mRNA |
5193 |
7173 |
. |
+ |
. |
ID=Dca45402.1;Parent=Dca45402 |
| scaffold5319 |
Augustus |
exon |
5193 |
6312 |
. |
+ |
. |
ID=Dca45402.1.exon1;Parent=Dca45402.1 |
| scaffold5319 |
Augustus |
exon |
6680 |
7173 |
. |
+ |
. |
ID=Dca45402.1.exon2;Parent=Dca45402.1 |
