Dca46285.1
Annotation
- 3-exons
- f-1
- sp|G9FIF2_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- sp|Q109Z4_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g11672#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold5504)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46285.1 |
16 |
549 |
549 |
59.92 |
534 |
50 |
4e-175
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|G9FIF2_BETVU |
279 |
940 |
1553 |
42.62 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46285.1 |
83 |
548 |
549 |
32.78 |
466 |
34 |
2e-79
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
411 |
932 |
1539 |
33.91 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5504 |
Augustus |
mRNA |
10889 |
12787 |
. |
+ |
. |
ID=Dca46285.1;Parent=Dca46285 |
| scaffold5504 |
Augustus |
exon |
10889 |
11499 |
. |
+ |
. |
ID=Dca46285.1.exon1;Parent=Dca46285.1 |
| scaffold5504 |
Augustus |
exon |
11596 |
12367 |
. |
+ |
. |
ID=Dca46285.1.exon2;Parent=Dca46285.1 |
| scaffold5504 |
Augustus |
exon |
12521 |
12787 |
. |
+ |
. |
ID=Dca46285.1.exon3;Parent=Dca46285.1 |
