Carnation DB

Dca46333.1

Annotation

9-exons
f-1
sp|B9IPY1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_665539#GO:0003677;GO:0003700;GO:0016987;GO:0006352#3F1P0C
sp|B9SDF8_RICCO#RNA polymerase sigma factor rpoD, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1517450#GO:0003677;GO:0003700;GO:0016987;GO:0006352#3F1P0C
Repeat List (scaffold5518)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46333.1	1	542	542	56.82	542	56	2e-163
Target_name	Start	End	Length	Cov(%)
sp\|B9IPY1_POPTR	1	509	509	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46333.1	2	542	542	53.69	541	52	2e-147
Target_name	Start	End	Length	Cov(%)
AT1G64860.1	1	502	502	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5518	Augustus	mRNA	12680	15760	.	+	.	ID=Dca46333.1;Parent=Dca46333
scaffold5518	Augustus	exon	12680	13335	.	+	.	ID=Dca46333.1.exon1;Parent=Dca46333.1
scaffold5518	Augustus	exon	13408	13606	.	+	.	ID=Dca46333.1.exon2;Parent=Dca46333.1
scaffold5518	Augustus	exon	13678	13770	.	+	.	ID=Dca46333.1.exon3;Parent=Dca46333.1
scaffold5518	Augustus	exon	13905	14033	.	+	.	ID=Dca46333.1.exon4;Parent=Dca46333.1
scaffold5518	Augustus	exon	14283	14336	.	+	.	ID=Dca46333.1.exon5;Parent=Dca46333.1
scaffold5518	Augustus	exon	14660	14872	.	+	.	ID=Dca46333.1.exon6;Parent=Dca46333.1
scaffold5518	Augustus	exon	15014	15076	.	+	.	ID=Dca46333.1.exon7;Parent=Dca46333.1
scaffold5518	Augustus	exon	15217	15329	.	+	.	ID=Dca46333.1.exon8;Parent=Dca46333.1
scaffold5518	Augustus	exon	15652	15760	.	+	.	ID=Dca46333.1.exon9;Parent=Dca46333.1