Dca46374.1
Annotation
- 2-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold5526)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46374.1 |
1 |
371 |
371 |
46.63 |
371 |
41 |
1e-77
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
207 |
616 |
1248 |
32.85 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46374.1 |
210 |
370 |
371 |
19.94 |
161 |
46 |
7e-38
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
548 |
709 |
1428 |
11.34 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5526 |
Augustus |
mRNA |
15450 |
17012 |
. |
+ |
. |
ID=Dca46374.1;Parent=Dca46374 |
| scaffold5526 |
Augustus |
exon |
15450 |
16041 |
. |
+ |
. |
ID=Dca46374.1.exon1;Parent=Dca46374.1 |
| scaffold5526 |
Augustus |
exon |
16489 |
17012 |
. |
+ |
. |
ID=Dca46374.1.exon2;Parent=Dca46374.1 |
