Dca46463.1
Annotation
- 2-exons
- f-1
- sp|D7U0G1_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_09s0002g04100#unknown#0F0P0C
- AT3G27750.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10284820-10285488 FORWARD LENGTH=222
- Repeat List (scaffold555)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46463.1 |
4 |
250 |
346 |
32.94 |
247 |
47 |
2e-46
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D7U0G1_VITVI |
11 |
228 |
230 |
94.78 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46463.1 |
28 |
233 |
346 |
27.45 |
206 |
47 |
1e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G27750.1 |
24 |
213 |
222 |
85.58 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold555 |
Augustus |
mRNA |
27340 |
29996 |
. |
+ |
. |
ID=Dca46463.1;Parent=Dca46463 |
| scaffold555 |
Augustus |
exon |
27340 |
28055 |
. |
+ |
. |
ID=Dca46463.1.exon1;Parent=Dca46463.1 |
| scaffold555 |
Augustus |
exon |
29672 |
29996 |
. |
+ |
. |
ID=Dca46463.1.exon2;Parent=Dca46463.1 |
