Dca47628.1
Annotation
- 2-exons
- f-1
- sp|A2I5E5_BETVU#Retrotransposon protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold5801)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47628.1 |
37 |
298 |
303 |
32.67 |
262 |
34 |
1e-31
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A2I5E5_BETVU |
78 |
371 |
1501 |
19.58 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47628.1 |
47 |
166 |
303 |
12.21 |
120 |
31 |
3e-08
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0315200-01 |
132 |
251 |
296 |
40.54 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5801 |
Augustus |
mRNA |
12259 |
13300 |
. |
+ |
. |
ID=Dca47628.1;Parent=Dca47628 |
| scaffold5801 |
Augustus |
exon |
12259 |
12353 |
. |
+ |
. |
ID=Dca47628.1.exon1;Parent=Dca47628.1 |
| scaffold5801 |
Augustus |
exon |
12484 |
13300 |
. |
+ |
. |
ID=Dca47628.1.exon2;Parent=Dca47628.1 |
