Dca47889.1
Annotation
- 3-exons
- f-1
- sp|Q7G209_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g38370#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold5852)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47889.1 |
44 |
501 |
501 |
45.3 |
458 |
47 |
6e-114
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7G209_ORYSJ |
744 |
1203 |
1663 |
27.66 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47889.1 |
57 |
501 |
501 |
31.53 |
445 |
31 |
1e-54
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
411 |
898 |
1539 |
31.7 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5852 |
Augustus |
mRNA |
16994 |
18799 |
. |
+ |
. |
ID=Dca47889.1;Parent=Dca47889 |
| scaffold5852 |
Augustus |
exon |
16994 |
17119 |
. |
+ |
. |
ID=Dca47889.1.exon1;Parent=Dca47889.1 |
| scaffold5852 |
Augustus |
exon |
17209 |
18040 |
. |
+ |
. |
ID=Dca47889.1.exon2;Parent=Dca47889.1 |
| scaffold5852 |
Augustus |
exon |
18252 |
18799 |
. |
+ |
. |
ID=Dca47889.1.exon3;Parent=Dca47889.1 |
