Dca5039.1
Annotation
- 2-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold1192)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5039.1 |
66 |
292 |
293 |
53.92 |
227 |
70 |
1e-88
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
1369 |
1595 |
1597 |
14.21 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5039.1 |
46 |
279 |
293 |
33.1 |
234 |
42 |
2e-45
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1165 |
1388 |
1401 |
15.98 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1192 |
Augustus |
mRNA |
78534 |
80616 |
. |
- |
. |
ID=Dca5039.1;Parent=Dca5039 |
| scaffold1192 |
Augustus |
exon |
78534 |
79227 |
. |
- |
. |
ID=Dca5039.1.exon1;Parent=Dca5039.1 |
| scaffold1192 |
Augustus |
exon |
80429 |
80616 |
. |
- |
. |
ID=Dca5039.1.exon2;Parent=Dca5039.1 |
