Carnation DB

Dca50479.1

Annotation

8-exons
f-1
sp|A9PK55_9ROSI#Putative uncharacterized protein#Populus trichocarpa x Populus deltoides#unknown#GO:0003676;GO:0000166#2F0P0C
AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:14166037-14169492 FORWARD LENGTH=979
Repeat List (scaffold6413)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50479.1	322	1021	1021	31.73	700	41	2e-133
Target_name	Start	End	Length	Cov(%)
sp\|A9PK55_9ROSI	12	787	787	98.6

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50479.1	372	698	1021	13.9	327	43	2e-55
Target_name	Start	End	Length	Cov(%)
AT2G33435.1	649	969	979	32.78

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold6413	Augustus	mRNA	1969	8745	.	-	.	ID=Dca50479.1;Parent=Dca50479
scaffold6413	Augustus	exon	1969	2351	.	-	.	ID=Dca50479.1.exon1;Parent=Dca50479.1
scaffold6413	Augustus	exon	2459	2655	.	-	.	ID=Dca50479.1.exon2;Parent=Dca50479.1
scaffold6413	Augustus	exon	3186	3265	.	-	.	ID=Dca50479.1.exon3;Parent=Dca50479.1
scaffold6413	Augustus	exon	3363	3455	.	-	.	ID=Dca50479.1.exon4;Parent=Dca50479.1
scaffold6413	Augustus	exon	3610	3717	.	-	.	ID=Dca50479.1.exon5;Parent=Dca50479.1
scaffold6413	Augustus	exon	4570	4689	.	-	.	ID=Dca50479.1.exon6;Parent=Dca50479.1
scaffold6413	Augustus	exon	6552	6689	.	-	.	ID=Dca50479.1.exon7;Parent=Dca50479.1
scaffold6413	Augustus	exon	6799	8745	.	-	.	ID=Dca50479.1.exon8;Parent=Dca50479.1