Carnation DB

Dca5195.1

Annotation

10-exons
f-1
sp|D7SIC8_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_17s0000g06030#GO:0005634;GO:0005488;GO:0006334#1F1P1C
sp|B9I2Z1_POPTR#Nucleosome/chromatin assembly factor group#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#Name=NFA906#GO:0005634;GO:0006334#0F1P1C
Repeat List (scaffold12)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5195.1	1	233	253	67.19	233	72	9e-92
Target_name	Start	End	Length	Cov(%)
sp\|D7SIC8_VITVI	1	238	268	88.8

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5195.1	6	218	253	64.03	213	75	1e-86
Target_name	Start	End	Length	Cov(%)
AT1G18800.1	5	221	256	84.76

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12	Augus-PASA	mRNA	155284	158265	.	-	.	ID=Dca5195.1;Parent=Dca5195
scaffold12	Augus-PASA	exon	155284	155349	.	-	.	ID=Dca5195.1.exon1;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	155470	155511	.	-	.	ID=Dca5195.1.exon2;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	155595	155651	.	-	.	ID=Dca5195.1.exon3;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	155737	155791	.	-	.	ID=Dca5195.1.exon4;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	156505	156566	.	-	.	ID=Dca5195.1.exon5;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	156662	156775	.	-	.	ID=Dca5195.1.exon6;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	156888	156959	.	-	.	ID=Dca5195.1.exon7;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	157102	157152	.	-	.	ID=Dca5195.1.exon8;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	157259	157381	.	-	.	ID=Dca5195.1.exon9;Parent=Dca5195.1
scaffold12	Augus-PASA	exon	158146	158265	.	-	.	ID=Dca5195.1.exon10;Parent=Dca5195.1