Dca52927.1
Annotation
- 2-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold700)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca52927.1 |
11 |
527 |
527 |
44.4 |
517 |
43 |
3e-116
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
86 |
629 |
1248 |
43.58 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca52927.1 |
298 |
527 |
527 |
18.4 |
230 |
42 |
2e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
490 |
723 |
1428 |
16.38 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold700 |
Augustus |
mRNA |
56569 |
58545 |
. |
+ |
. |
ID=Dca52927.1;Parent=Dca52927 |
| scaffold700 |
Augustus |
exon |
56569 |
57400 |
. |
+ |
. |
ID=Dca52927.1.exon1;Parent=Dca52927.1 |
| scaffold700 |
Augustus |
exon |
57794 |
58545 |
. |
+ |
. |
ID=Dca52927.1.exon2;Parent=Dca52927.1 |
