Dca53680.1
Annotation
- 2-exons
- f-1
- sp|Q6L3S2_SOLDE#Putative retrotransposon protein, identical#Solanum demissum (Wild potato)#ORFNames=SDM1_41t00017#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold721)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53680.1 |
27 |
108 |
130 |
32.3 |
82 |
52 |
1e-18
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q6L3S2_SOLDE |
1520 |
1601 |
1602 |
5.11 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53680.1 |
26 |
105 |
130 |
20.76 |
80 |
34 |
9e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0627900-01 |
150 |
229 |
230 |
34.78 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold721 |
Augustus |
mRNA |
80492 |
81058 |
. |
+ |
. |
ID=Dca53680.1;Parent=Dca53680 |
| scaffold721 |
Augustus |
exon |
80492 |
80569 |
. |
+ |
. |
ID=Dca53680.1.exon1;Parent=Dca53680.1 |
| scaffold721 |
Augustus |
exon |
80744 |
81058 |
. |
+ |
. |
ID=Dca53680.1.exon2;Parent=Dca53680.1 |
