Carnation DB

Dca56087.1

Annotation

7-exons
f-1
sp|D7U470_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_04s0044g00100#GO:0016021#0F0P1C
AT4G16444.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9274791-9276056 REVERSE LENGTH=178
Repeat List (scaffold79)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56087.1	3	174	174	58.04	172	59	1e-47
Target_name	Start	End	Length	Cov(%)
sp\|D7U470_VITVI	6	176	176	97.15

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56087.1	1	170	174	52.29	170	54	1e-41
Target_name	Start	End	Length	Cov(%)
AT4G16444.1	7	174	178	94.38

seqname	source	feature	start	end	score	strand	frame	group
scaffold79	Augus-PASA	mRNA	229613	232689	.	+	.	ID=Dca56087.1;Parent=Dca56087
scaffold79	Augus-PASA	exon	229613	229708	.	+	.	ID=Dca56087.1.exon1;Parent=Dca56087.1
scaffold79	Augus-PASA	exon	231072	231154	.	+	.	ID=Dca56087.1.exon2;Parent=Dca56087.1
scaffold79	Augus-PASA	exon	231583	231653	.	+	.	ID=Dca56087.1.exon3;Parent=Dca56087.1
scaffold79	Augus-PASA	exon	232038	232108	.	+	.	ID=Dca56087.1.exon4;Parent=Dca56087.1
scaffold79	Augus-PASA	exon	232196	232277	.	+	.	ID=Dca56087.1.exon5;Parent=Dca56087.1
scaffold79	Augus-PASA	exon	232419	232468	.	+	.	ID=Dca56087.1.exon6;Parent=Dca56087.1
scaffold79	Augus-PASA	exon	232618	232689	.	+	.	ID=Dca56087.1.exon7;Parent=Dca56087.1