Carnation DB

Dca5830.1

Annotation

14-exons
f-1
sp|D7MIW4_ARALL#DNA repair and transcription factor XPB1#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_916071#GO:0005524;GO:0004003;GO:0003677;GO:0006289#3F1P0C
Repeat List (scaffold1225)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5830.1	2	580	585	83.24	579	79	0
Target_name	Start	End	Length	Cov(%)
sp\|D7MIW4_ARALL	51	669	767	80.7

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5830.1	2	580	585	83.41	579	79	0
Target_name	Start	End	Length	Cov(%)
AT5G41360.1	51	669	766	80.8

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1225	Augustus	mRNA	53676	58417	.	+	.	ID=Dca5830.1;Parent=Dca5830
scaffold1225	Augustus	exon	53676	53688	.	+	.	ID=Dca5830.1.exon1;Parent=Dca5830.1
scaffold1225	Augustus	exon	53870	54005	.	+	.	ID=Dca5830.1.exon2;Parent=Dca5830.1
scaffold1225	Augustus	exon	54088	54310	.	+	.	ID=Dca5830.1.exon3;Parent=Dca5830.1
scaffold1225	Augustus	exon	54391	54447	.	+	.	ID=Dca5830.1.exon4;Parent=Dca5830.1
scaffold1225	Augustus	exon	54583	54678	.	+	.	ID=Dca5830.1.exon5;Parent=Dca5830.1
scaffold1225	Augustus	exon	54815	54895	.	+	.	ID=Dca5830.1.exon6;Parent=Dca5830.1
scaffold1225	Augustus	exon	55017	55104	.	+	.	ID=Dca5830.1.exon7;Parent=Dca5830.1
scaffold1225	Augustus	exon	55207	55544	.	+	.	ID=Dca5830.1.exon8;Parent=Dca5830.1
scaffold1225	Augustus	exon	55634	55709	.	+	.	ID=Dca5830.1.exon9;Parent=Dca5830.1
scaffold1225	Augustus	exon	55799	55992	.	+	.	ID=Dca5830.1.exon10;Parent=Dca5830.1
scaffold1225	Augustus	exon	56122	56286	.	+	.	ID=Dca5830.1.exon11;Parent=Dca5830.1
scaffold1225	Augustus	exon	57222	57335	.	+	.	ID=Dca5830.1.exon12;Parent=Dca5830.1
scaffold1225	Augustus	exon	58139	58219	.	+	.	ID=Dca5830.1.exon13;Parent=Dca5830.1
scaffold1225	Augustus	exon	58322	58417	.	+	.	ID=Dca5830.1.exon14;Parent=Dca5830.1