Dca58542.1
Annotation
- 3-exons
- f-1
- sp|B9SX46_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_0547610#unknown#0F0P0C
- AT2G43630.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18096255-18097344 FORWARD LENGTH=274
- Repeat List (scaffold86)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58542.1 |
53 |
239 |
271 |
37.26 |
187 |
53 |
2e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9SX46_RICCO |
69 |
253 |
259 |
71.42 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58542.1 |
12 |
255 |
271 |
38.37 |
244 |
40 |
9e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT2G43630.1 |
24 |
273 |
274 |
91.24 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold86 |
Augus-PASA |
mRNA |
401287 |
403821 |
. |
+ |
. |
ID=Dca58542.1;Parent=Dca58542 |
| scaffold86 |
Augus-PASA |
exon |
401287 |
401502 |
. |
+ |
. |
ID=Dca58542.1.exon1;Parent=Dca58542.1 |
| scaffold86 |
Augus-PASA |
exon |
403011 |
403271 |
. |
+ |
. |
ID=Dca58542.1.exon2;Parent=Dca58542.1 |
| scaffold86 |
Augus-PASA |
exon |
403483 |
403821 |
. |
+ |
. |
ID=Dca58542.1.exon3;Parent=Dca58542.1 |
