Carnation DB

Dca58559.1

Annotation

8-exons
f-1
sp|B9HNQ2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_202856#GO:0005576;GO:0004650;GO:0005975;GO:0007047#1F2P1C
AT3G07970.1 | Symbols: QRT2 | Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439
Repeat List (scaffold86)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca58559.1	72	437	440	49.77	366	60	9e-132
Target_name	Start	End	Length	Cov(%)
sp\|B9HNQ2_POPTR	8	376	376	98.13

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca58559.1	9	437	440	53.86	429	54	2e-129
Target_name	Start	End	Length	Cov(%)
AT3G07970.1	7	439	439	98.63

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold86	Augus-PASA	mRNA	498673	500761	.	-	.	ID=Dca58559.1;Parent=Dca58559
scaffold86	Augus-PASA	exon	498673	498900	.	-	.	ID=Dca58559.1.exon1;Parent=Dca58559.1
scaffold86	Augus-PASA	exon	498987	499103	.	-	.	ID=Dca58559.1.exon2;Parent=Dca58559.1
scaffold86	Augus-PASA	exon	499192	499300	.	-	.	ID=Dca58559.1.exon3;Parent=Dca58559.1
scaffold86	Augus-PASA	exon	499392	499473	.	-	.	ID=Dca58559.1.exon4;Parent=Dca58559.1
scaffold86	Augus-PASA	exon	499692	499899	.	-	.	ID=Dca58559.1.exon5;Parent=Dca58559.1
scaffold86	Augus-PASA	exon	499999	500019	.	-	.	ID=Dca58559.1.exon6;Parent=Dca58559.1
scaffold86	Augustus	exon	500114	500278	.	-	.	ID=Dca58559.1.exon7;Parent=Dca58559.1
scaffold86	Augustus	exon	500369	500761	.	-	.	ID=Dca58559.1.exon8;Parent=Dca58559.1