Carnation DB

Dca58560.1

Annotation

12-exons
f-1
sp|B9GFE0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_706415#unknown#0F0P0C
AT4G15030.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8498 Blast hits to 5699 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3838; Fungi - 743; Plants - 650; Viruses - 76; Other Eukaryotes - 2921 (source: NCBI BLink). | chr4:8578989-8581180 FORWARD LENGTH=282
Repeat List (scaffold86)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca58560.1	8	278	278	55.75	271	55	2e-76
Target_name	Start	End	Length	Cov(%)
sp\|B9GFE0_POPTR	1	243	243	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca58560.1	8	278	278	55.75	271	54	3e-71
Target_name	Start	End	Length	Cov(%)
AT4G15030.2	1	279	282	98.93

seqname	source	feature	start	end	score	strand	frame	group
scaffold86	Augus-PASA	mRNA	502728	508120	.	-	.	ID=Dca58560.1;Parent=Dca58560
scaffold86	Augus-PASA	exon	502728	502819	.	-	.	ID=Dca58560.1.exon1;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	503021	503088	.	-	.	ID=Dca58560.1.exon2;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	503182	503298	.	-	.	ID=Dca58560.1.exon3;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	503412	503495	.	-	.	ID=Dca58560.1.exon4;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	503772	503839	.	-	.	ID=Dca58560.1.exon5;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	504835	504893	.	-	.	ID=Dca58560.1.exon6;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	505546	505591	.	-	.	ID=Dca58560.1.exon7;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	506710	506749	.	-	.	ID=Dca58560.1.exon8;Parent=Dca58560.1
scaffold86	Augustus	exon	507146	507181	.	-	.	ID=Dca58560.1.exon9;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	507315	507396	.	-	.	ID=Dca58560.1.exon10;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	507854	507921	.	-	.	ID=Dca58560.1.exon11;Parent=Dca58560.1
scaffold86	Augus-PASA	exon	508044	508120	.	-	.	ID=Dca58560.1.exon12;Parent=Dca58560.1