Carnation DB

Dca58984.1

Annotation

8-exons
f-1
sp|B9SKR7_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1604350#GO:0005737;GO:0006914#0F1P1C
AT5G17290.1 | Symbols: ATG5, APG5, ATATG5 | autophagy protein Apg5 family | chr5:5687160-5689821 REVERSE LENGTH=337
Repeat List (scaffold8733)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca58984.1	7	364	380	53.42	358	56	2e-113
Target_name	Start	End	Length	Cov(%)
sp\|B9SKR7_RICCO	2	360	368	97.55

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca58984.1	4	364	380	48.42	361	51	4e-103
Target_name	Start	End	Length	Cov(%)
AT5G17290.1	1	332	337	98.51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold8733	Augus-PASA	mRNA	2764	8500	.	-	.	ID=Dca58984.1;Parent=Dca58984
scaffold8733	Augus-PASA	exon	2764	3155	.	-	.	ID=Dca58984.1.exon1;Parent=Dca58984.1
scaffold8733	Augus-PASA	exon	3468	3599	.	-	.	ID=Dca58984.1.exon2;Parent=Dca58984.1
scaffold8733	Augus-PASA	exon	3714	3848	.	-	.	ID=Dca58984.1.exon3;Parent=Dca58984.1
scaffold8733	Augus-PASA	exon	4169	4256	.	-	.	ID=Dca58984.1.exon4;Parent=Dca58984.1
scaffold8733	Augus-PASA	exon	4425	4514	.	-	.	ID=Dca58984.1.exon5;Parent=Dca58984.1
scaffold8733	Augus-PASA	exon	5053	5119	.	-	.	ID=Dca58984.1.exon6;Parent=Dca58984.1
scaffold8733	Augus-PASA	exon	5823	5947	.	-	.	ID=Dca58984.1.exon7;Parent=Dca58984.1
scaffold8733	Augus-PASA	exon	8387	8500	.	-	.	ID=Dca58984.1.exon8;Parent=Dca58984.1