Carnation DB

Dca6027.1

Annotation

9-exons
f-1
sp|D7M433_ARALL#Predicted protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_663711#GO:0005737;GO:0008270#1F0P1C
AT4G02220.1 | Symbols: | zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein | chr4:976728-978902 FORWARD LENGTH=418
Repeat List (scaffold12342)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6027.1	9	336	375	47.73	328	54	3e-93
Target_name	Start	End	Length	Cov(%)
sp\|D7M433_ARALL	5	336	419	79.23

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6027.1	9	336	375	48.26	328	54	4e-91
Target_name	Start	End	Length	Cov(%)
AT4G02220.1	5	335	418	79.18

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12342	Augustus	mRNA	3728	8557	.	+	.	ID=Dca6027.1;Parent=Dca6027
scaffold12342	Augustus	exon	3728	3979	.	+	.	ID=Dca6027.1.exon1;Parent=Dca6027.1
scaffold12342	Augustus	exon	4078	4161	.	+	.	ID=Dca6027.1.exon2;Parent=Dca6027.1
scaffold12342	Augustus	exon	4678	4811	.	+	.	ID=Dca6027.1.exon3;Parent=Dca6027.1
scaffold12342	Augustus	exon	4942	5033	.	+	.	ID=Dca6027.1.exon4;Parent=Dca6027.1
scaffold12342	Augustus	exon	6032	6120	.	+	.	ID=Dca6027.1.exon5;Parent=Dca6027.1
scaffold12342	Augustus	exon	6207	6318	.	+	.	ID=Dca6027.1.exon6;Parent=Dca6027.1
scaffold12342	Augustus	exon	7383	7540	.	+	.	ID=Dca6027.1.exon7;Parent=Dca6027.1
scaffold12342	Augustus	exon	7645	7715	.	+	.	ID=Dca6027.1.exon8;Parent=Dca6027.1
scaffold12342	Augustus	exon	8422	8557	.	+	.	ID=Dca6027.1.exon9;Parent=Dca6027.1