Carnation DB

Dca60997.1

Annotation

11-exons
f-1
sp|B9HG65_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_819875#unknown#0F0P0C
Os03t0851300-03 Winged helix repressor DNA-binding domain containing protein.
Repeat List (scaffold94)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca60997.1	4	440	440	84.77	437	86	0
Target_name	Start	End	Length	Cov(%)
sp\|B9HG65_POPTR	6	442	442	98.86

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca60997.1	2	439	440	80.68	438	82	0
Target_name	Start	End	Length	Cov(%)
Os03t0851300-03	5	442	444	98.64

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold94	Augus-PASA	mRNA	164298	168661	.	+	.	ID=Dca60997.1;Parent=Dca60997
scaffold94	Augus-PASA	exon	164298	164303	.	+	.	ID=Dca60997.1.exon1;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	165300	165485	.	+	.	ID=Dca60997.1.exon2;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	166018	166125	.	+	.	ID=Dca60997.1.exon3;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	166218	166322	.	+	.	ID=Dca60997.1.exon4;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	166450	166506	.	+	.	ID=Dca60997.1.exon5;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	166593	166789	.	+	.	ID=Dca60997.1.exon6;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	166939	167038	.	+	.	ID=Dca60997.1.exon7;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	167120	167232	.	+	.	ID=Dca60997.1.exon8;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	167342	167495	.	+	.	ID=Dca60997.1.exon9;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	167588	167665	.	+	.	ID=Dca60997.1.exon10;Parent=Dca60997.1
scaffold94	Augus-PASA	exon	168443	168661	.	+	.	ID=Dca60997.1.exon11;Parent=Dca60997.1