Carnation DB

Dca6171.1

Annotation

5-exons
f-1
sp|A5AMR9_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_012014#GO:0005576;GO:0004650;GO:0005975;GO:0007047#1F2P1C
Os01t0517500-01 Similar to Polygalacturonase (Fragment).
Repeat List (scaffold124)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6171.1	29	390	396	30.55	362	33	1e-45
Target_name	Start	End	Length	Cov(%)
sp\|A5AMR9_VITVI	483	835	863	40.9

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6171.1	1	390	396	33.83	390	34	2e-51
Target_name	Start	End	Length	Cov(%)
Os01t0517500-01	5	379	408	91.91

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold124	Augustus	mRNA	341388	344042	.	-	.	ID=Dca6171.1;Parent=Dca6171
scaffold124	Augustus	exon	341388	341546	.	-	.	ID=Dca6171.1.exon1;Parent=Dca6171.1
scaffold124	Augustus	exon	342205	342445	.	-	.	ID=Dca6171.1.exon2;Parent=Dca6171.1
scaffold124	Augustus	exon	342707	343002	.	-	.	ID=Dca6171.1.exon3;Parent=Dca6171.1
scaffold124	Augustus	exon	343103	343414	.	-	.	ID=Dca6171.1.exon4;Parent=Dca6171.1
scaffold124	Augustus	exon	343860	344042	.	-	.	ID=Dca6171.1.exon5;Parent=Dca6171.1