Dca62013.1
Annotation
- 3-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold9766)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62013.1 |
1 |
449 |
457 |
42.45 |
449 |
39 |
7e-92
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
150 |
630 |
1248 |
38.54 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62013.1 |
260 |
450 |
457 |
18.16 |
191 |
44 |
5e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
533 |
725 |
1428 |
13.51 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold9766 |
Augustus |
mRNA |
361 |
2120 |
. |
- |
. |
ID=Dca62013.1;Parent=Dca62013 |
| scaffold9766 |
Augustus |
exon |
361 |
1049 |
. |
- |
. |
ID=Dca62013.1.exon1;Parent=Dca62013.1 |
| scaffold9766 |
Augustus |
exon |
1279 |
1522 |
. |
- |
. |
ID=Dca62013.1.exon2;Parent=Dca62013.1 |
| scaffold9766 |
Augustus |
exon |
1680 |
2120 |
. |
- |
. |
ID=Dca62013.1.exon3;Parent=Dca62013.1 |
