Carnation DB

Dca6224.1

Annotation

18-exons
f-1
sp|Q5D868_SPIOL#DNA-directed RNA polymerase#Spinacia oleracea (Spinach)#Name=NRPD1b#GO:0005507;GO:0003677;GO:0003899;GO:0048038;GO:0009308#4F1P0C
Repeat List (scaffold1243)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6224.1	212	1993	2054	57.1	1782	61	0
Target_name	Start	End	Length	Cov(%)
sp\|Q5D868_SPIOL	1	1872	1902	98.42

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6224.1	1442	2046	2054	9.83	605	32	5e-61
Target_name	Start	End	Length	Cov(%)
AT2G40030.1	1329	1906	1976	29.25

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1243	Augustus	mRNA	28457	41902	.	+	.	ID=Dca6224.1;Parent=Dca6224
scaffold1243	Augustus	exon	28457	28537	.	+	.	ID=Dca6224.1.exon1;Parent=Dca6224.1
scaffold1243	Augustus	exon	28973	29099	.	+	.	ID=Dca6224.1.exon2;Parent=Dca6224.1
scaffold1243	Augustus	exon	29947	30062	.	+	.	ID=Dca6224.1.exon3;Parent=Dca6224.1
scaffold1243	Augustus	exon	30257	30310	.	+	.	ID=Dca6224.1.exon4;Parent=Dca6224.1
scaffold1243	Augustus	exon	30883	31050	.	+	.	ID=Dca6224.1.exon5;Parent=Dca6224.1
scaffold1243	Augustus	exon	31635	31793	.	+	.	ID=Dca6224.1.exon6;Parent=Dca6224.1
scaffold1243	Augustus	exon	31881	32036	.	+	.	ID=Dca6224.1.exon7;Parent=Dca6224.1
scaffold1243	Augustus	exon	32792	34525	.	+	.	ID=Dca6224.1.exon8;Parent=Dca6224.1
scaffold1243	Augustus	exon	34635	34772	.	+	.	ID=Dca6224.1.exon9;Parent=Dca6224.1
scaffold1243	Augustus	exon	35252	35376	.	+	.	ID=Dca6224.1.exon10;Parent=Dca6224.1
scaffold1243	Augustus	exon	36161	36315	.	+	.	ID=Dca6224.1.exon11;Parent=Dca6224.1
scaffold1243	Augustus	exon	37055	37323	.	+	.	ID=Dca6224.1.exon12;Parent=Dca6224.1
scaffold1243	Augustus	exon	37736	37909	.	+	.	ID=Dca6224.1.exon13;Parent=Dca6224.1
scaffold1243	Augustus	exon	38011	38151	.	+	.	ID=Dca6224.1.exon14;Parent=Dca6224.1
scaffold1243	Augustus	exon	38242	39264	.	+	.	ID=Dca6224.1.exon15;Parent=Dca6224.1
scaffold1243	Augustus	exon	39960	41017	.	+	.	ID=Dca6224.1.exon16;Parent=Dca6224.1
scaffold1243	Augustus	exon	41120	41234	.	+	.	ID=Dca6224.1.exon17;Parent=Dca6224.1
scaffold1243	Augustus	exon	41531	41902	.	+	.	ID=Dca6224.1.exon18;Parent=Dca6224.1