Dca629.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold1013)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca629.1 |
1 |
103 |
492 |
13.61 |
103 |
66 |
3e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
406 |
508 |
1050 |
9.8 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca629.1 |
105 |
258 |
492 |
13.61 |
154 |
44 |
7e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
943 |
1096 |
1428 |
10.78 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1013 |
Augustus |
mRNA |
55331 |
57338 |
. |
+ |
. |
ID=Dca629.1;Parent=Dca629 |
| scaffold1013 |
Augustus |
exon |
55331 |
55642 |
. |
+ |
. |
ID=Dca629.1.exon1;Parent=Dca629.1 |
| scaffold1013 |
Augustus |
exon |
55977 |
56468 |
. |
+ |
. |
ID=Dca629.1.exon2;Parent=Dca629.1 |
| scaffold1013 |
Augustus |
exon |
56664 |
57338 |
. |
+ |
. |
ID=Dca629.1.exon3;Parent=Dca629.1 |
