Dca8180.1
Annotation
- 3-exons
- f-1
- sp|B9GHH7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_642671#GO:0003723#1F0P0C
- Os03t0115200-01 Similar to Partner of Nob1; Pno1p; Yor145cp like KH domain containing protein, transcripts identified by EST.
- Repeat List (scaffold134)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca8180.1 |
79 |
277 |
278 |
33.81 |
199 |
47 |
4e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9GHH7_POPTR |
18 |
209 |
223 |
86.09 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca8180.1 |
95 |
277 |
278 |
33.81 |
183 |
50 |
1e-40
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0115200-01 |
30 |
213 |
228 |
80.7 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold134 |
Augustus |
mRNA |
188258 |
192535 |
. |
+ |
. |
ID=Dca8180.1;Parent=Dca8180 |
| scaffold134 |
Augustus |
exon |
188258 |
188263 |
. |
+ |
. |
ID=Dca8180.1.exon1;Parent=Dca8180.1 |
| scaffold134 |
Augustus |
exon |
188394 |
188614 |
. |
+ |
. |
ID=Dca8180.1.exon2;Parent=Dca8180.1 |
| scaffold134 |
Augustus |
exon |
191926 |
192535 |
. |
+ |
. |
ID=Dca8180.1.exon3;Parent=Dca8180.1 |
