Dca8196.1
Annotation
- 4-exons
- f-1
- sp|Q2R2I1_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g35740#unknown#0F0P0C
- Repeat List (scaffold1340)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca8196.1 |
1 |
338 |
486 |
45.47 |
338 |
65 |
6e-124
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R2I1_ORYSJ |
570 |
909 |
1064 |
31.95 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca8196.1 |
33 |
336 |
486 |
25.92 |
304 |
42 |
3e-67
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
895 |
1198 |
1401 |
21.69 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1340 |
Augustus |
mRNA |
43802 |
47400 |
. |
- |
. |
ID=Dca8196.1;Parent=Dca8196 |
| scaffold1340 |
Augustus |
exon |
43802 |
43909 |
. |
- |
. |
ID=Dca8196.1.exon1;Parent=Dca8196.1 |
| scaffold1340 |
Augustus |
exon |
44065 |
44225 |
. |
- |
. |
ID=Dca8196.1.exon2;Parent=Dca8196.1 |
| scaffold1340 |
Augustus |
exon |
44340 |
44517 |
. |
- |
. |
ID=Dca8196.1.exon3;Parent=Dca8196.1 |
| scaffold1340 |
Augustus |
exon |
46387 |
47400 |
. |
- |
. |
ID=Dca8196.1.exon4;Parent=Dca8196.1 |
