Dca9019.1
Annotation
- 3-exons
- f-1
- sp|Q10LB8_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass, expressed#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g23780#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold1385)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9019.1 |
4 |
451 |
455 |
56.26 |
448 |
50 |
7e-137
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10LB8_ORYSJ |
379 |
890 |
1305 |
39.23 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9019.1 |
191 |
280 |
455 |
8.13 |
90 |
42 |
3e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
513 |
602 |
707 |
12.72 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1385 |
Augustus |
mRNA |
12161 |
13871 |
. |
- |
. |
ID=Dca9019.1;Parent=Dca9019 |
| scaffold1385 |
Augustus |
exon |
12161 |
12967 |
. |
- |
. |
ID=Dca9019.1.exon1;Parent=Dca9019.1 |
| scaffold1385 |
Augustus |
exon |
13203 |
13400 |
. |
- |
. |
ID=Dca9019.1.exon2;Parent=Dca9019.1 |
| scaffold1385 |
Augustus |
exon |
13509 |
13871 |
. |
- |
. |
ID=Dca9019.1.exon3;Parent=Dca9019.1 |
