Carnation DB

Dca9701.1

Annotation

5-exons
f-1
sp|Q2QYG3_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g02780#unknown#0F0P0C
Repeat List (scaffold1419)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca9701.1	239	452	452	27.21	214	54	4e-58
Target_name	Start	End	Length	Cov(%)
sp\|Q2QYG3_ORYSJ	64	292	389	58.86

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca9701.1	246	449	452	18.58	204	32	1e-26
Target_name	Start	End	Length	Cov(%)
Os08t0125300-01	961	1224	1428	18.48

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1419	Augustus	mRNA	47551	50203	.	+	.	ID=Dca9701.1;Parent=Dca9701
scaffold1419	Augustus	exon	47551	47787	.	+	.	ID=Dca9701.1.exon1;Parent=Dca9701.1
scaffold1419	Augustus	exon	47926	48076	.	+	.	ID=Dca9701.1.exon2;Parent=Dca9701.1
scaffold1419	Augustus	exon	48927	49273	.	+	.	ID=Dca9701.1.exon3;Parent=Dca9701.1
scaffold1419	Augustus	exon	49442	49736	.	+	.	ID=Dca9701.1.exon4;Parent=Dca9701.1
scaffold1419	Augustus	exon	49875	50203	.	+	.	ID=Dca9701.1.exon5;Parent=Dca9701.1