Dca9873.1
Annotation
- 4-exons
- f-1
- sp|Q9FRJ2_ORYSJ#Putative copia-like retrotransposon polyprotein#Oryza sativa subsp japonica (Rice)#Name=OSJNBb0064P21.11#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold14260)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9873.1 |
588 |
704 |
710 |
10.7 |
117 |
65 |
5e-40
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9FRJ2_ORYSJ |
1157 |
1273 |
1302 |
8.98 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9873.1 |
586 |
701 |
710 |
6.61 |
116 |
41 |
4e-15
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1306 |
1421 |
1428 |
8.12 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold14260 |
Augustus |
mRNA |
7010 |
10080 |
. |
+ |
. |
ID=Dca9873.1;Parent=Dca9873 |
| scaffold14260 |
Augustus |
exon |
7010 |
7550 |
. |
+ |
. |
ID=Dca9873.1.exon1;Parent=Dca9873.1 |
| scaffold14260 |
Augustus |
exon |
7936 |
9032 |
. |
+ |
. |
ID=Dca9873.1.exon2;Parent=Dca9873.1 |
| scaffold14260 |
Augustus |
exon |
9146 |
9269 |
. |
+ |
. |
ID=Dca9873.1.exon3;Parent=Dca9873.1 |
| scaffold14260 |
Augustus |
exon |
9710 |
10080 |
. |
+ |
. |
ID=Dca9873.1.exon4;Parent=Dca9873.1 |
