Carnation DB

Dca9882.1

Annotation

12-exons
f-1
sp|F6H428_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_14s0068g01090#GO:0005694;GO:0005634;GO:0042393;GO:0008270#2F0P2C
sp|B9GNG0_POPTR#SET domain protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#Name=SDG939#GO:0005694;GO:0005634;GO:0042393;GO:0018024;GO:0008270#3F0P2C
Repeat List (scaffold1427)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca9882.1	116	576	576	57.63	461	73	0
Target_name	Start	End	Length	Cov(%)
sp\|F6H428_VITVI	74	525	525	86.09

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca9882.1	138	576	576	48.78	439	64	7e-175
Target_name	Start	End	Length	Cov(%)
AT5G13960.1	185	624	624	70.51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1427	Augus-PASA	mRNA	54722	62954	.	-	.	ID=Dca9882.1;Parent=Dca9882
scaffold1427	Augus-PASA	exon	54722	54835	.	-	.	ID=Dca9882.1.exon1;Parent=Dca9882.1
scaffold1427	Augus-PASA	exon	55547	55777	.	-	.	ID=Dca9882.1.exon2;Parent=Dca9882.1
scaffold1427	Augus-PASA	exon	56180	56362	.	-	.	ID=Dca9882.1.exon3;Parent=Dca9882.1
scaffold1427	Augus-PASA	exon	56451	56556	.	-	.	ID=Dca9882.1.exon4;Parent=Dca9882.1
scaffold1427	Augus-PASA	exon	56638	56797	.	-	.	ID=Dca9882.1.exon5;Parent=Dca9882.1
scaffold1427	Augus-PASA	exon	57451	57539	.	-	.	ID=Dca9882.1.exon6;Parent=Dca9882.1
scaffold1427	Augus-PASA	exon	57623	57672	.	-	.	ID=Dca9882.1.exon7;Parent=Dca9882.1
scaffold1427	Augustus	exon	58662	58760	.	-	.	ID=Dca9882.1.exon8;Parent=Dca9882.1
scaffold1427	Augustus	exon	61119	61217	.	-	.	ID=Dca9882.1.exon9;Parent=Dca9882.1
scaffold1427	Augustus	exon	61317	61493	.	-	.	ID=Dca9882.1.exon10;Parent=Dca9882.1
scaffold1427	Augustus	exon	62430	62474	.	-	.	ID=Dca9882.1.exon11;Parent=Dca9882.1
scaffold1427	Augustus	exon	62577	62954	.	-	.	ID=Dca9882.1.exon12;Parent=Dca9882.1