Dca990.1
Annotation
- 3-exons
- f-1
- sp|F6I2Y2_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_15s0048g02570#unknown#0F0P0C
- AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink). | chr4:573098-577243 REVERSE LENGTH=1110
- Repeat List (scaffold1027)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca990.1 |
1 |
504 |
651 |
66.82 |
504 |
86 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|F6I2Y2_VITVI |
238 |
744 |
744 |
68.14 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca990.1 |
1 |
504 |
651 |
62.36 |
504 |
81 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G01400.1 |
605 |
1110 |
1110 |
45.58 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1027 |
Augustus |
mRNA |
128676 |
132538 |
. |
+ |
. |
ID=Dca990.1;Parent=Dca990 |
| scaffold1027 |
Augustus |
exon |
128676 |
129560 |
. |
+ |
. |
ID=Dca990.1.exon1;Parent=Dca990.1 |
| scaffold1027 |
Augustus |
exon |
130284 |
130909 |
. |
+ |
. |
ID=Dca990.1.exon2;Parent=Dca990.1 |
| scaffold1027 |
Augustus |
exon |
132094 |
132538 |
. |
+ |
. |
ID=Dca990.1.exon3;Parent=Dca990.1 |
