scaffold1039 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1039 |
1 |
164 |
- |
RS424 |
Unspecified |
| scaffold1039 |
861 |
911 |
+ |
(TTAATAG)n |
Simple_repeat |
| scaffold1039 |
1348 |
1470 |
+ |
RS5318 |
Unspecified |
| scaffold1039 |
1483 |
1604 |
+ |
G-rich |
Low_complexity |
| scaffold1039 |
1927 |
1952 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold1039 |
2036 |
2069 |
+ |
G-rich |
Low_complexity |
| scaffold1039 |
2086 |
2157 |
+ |
RS5318 |
Unspecified |
| scaffold1039 |
2494 |
2526 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold1039 |
2524 |
2878 |
+ |
RS1148 |
Unspecified |
| scaffold1039 |
2754 |
3017 |
+ |
RS4227 |
Unspecified |
| scaffold1039 |
2893 |
3199 |
+ |
RS331 |
Unspecified |
| scaffold1039 |
3054 |
3277 |
- |
RS2128 |
Unspecified |
| scaffold1039 |
3353 |
3462 |
+ |
(AAGATG)n |
Simple_repeat |
| scaffold1039 |
3750 |
3775 |
+ |
(TTA)n |
Simple_repeat |
| scaffold1039 |
4427 |
4868 |
- |
RS2159 |
Unspecified |
| scaffold1039 |
5700 |
5750 |
+ |
RS2119 |
Unspecified |
| scaffold1039 |
5746 |
6209 |
+ |
RS440 |
Unspecified |
| scaffold1039 |
6202 |
6250 |
+ |
RS440 |
Unspecified |
| scaffold1039 |
6246 |
6448 |
+ |
RS440 |
Unspecified |
| scaffold1039 |
6709 |
6727 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
7048 |
7157 |
- |
RS385 |
Unspecified |
| scaffold1039 |
7435 |
7465 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
7507 |
7564 |
+ |
(T)n |
Simple_repeat |
| scaffold1039 |
7865 |
7902 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
7968 |
8026 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold1039 |
9017 |
9207 |
+ |
RS4 |
Unspecified |
| scaffold1039 |
9281 |
9854 |
- |
RS2618 |
Unspecified |
| scaffold1039 |
10675 |
11043 |
- |
RS8 |
Unspecified |
| scaffold1039 |
11039 |
11084 |
+ |
(TTTATTT)n |
Simple_repeat |
| scaffold1039 |
12351 |
12458 |
- |
RS5191 |
Unspecified |
| scaffold1039 |
12461 |
12479 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
12710 |
12793 |
- |
RS997 |
Unspecified |
| scaffold1039 |
12742 |
12825 |
- |
RS997 |
Unspecified |
| scaffold1039 |
12775 |
12854 |
- |
RS997 |
Unspecified |
| scaffold1039 |
12831 |
12917 |
- |
RS73 |
Unspecified |
| scaffold1039 |
13004 |
13040 |
+ |
(AAGAATG)n |
Simple_repeat |
| scaffold1039 |
13603 |
13626 |
+ |
(T)n |
Simple_repeat |
| scaffold1039 |
13795 |
13865 |
+ |
(ACTTAT)n |
Simple_repeat |
| scaffold1039 |
13918 |
14247 |
+ |
RS30 |
Unspecified |
| scaffold1039 |
15931 |
16054 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
16084 |
16130 |
+ |
(ATTTTTA)n |
Simple_repeat |
| scaffold1039 |
16237 |
16278 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
16429 |
16454 |
+ |
(TAT)n |
Simple_repeat |
| scaffold1039 |
16528 |
16805 |
- |
RS4686 |
Unspecified |
| scaffold1039 |
17103 |
17153 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
17252 |
17297 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold1039 |
17351 |
17385 |
+ |
(GTAAT)n |
Simple_repeat |
| scaffold1039 |
17369 |
17403 |
+ |
(GTATT)n |
Simple_repeat |
| scaffold1039 |
17448 |
17523 |
+ |
RS3060 |
Unspecified |
| scaffold1039 |
17695 |
17745 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
17844 |
17889 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold1039 |
17943 |
17995 |
+ |
(GTAAT)n |
Simple_repeat |
| scaffold1039 |
18188 |
18281 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
18417 |
18856 |
+ |
PL85 |
Unspecified |
| scaffold1039 |
18854 |
19242 |
+ |
PL840 |
Unspecified |
| scaffold1039 |
18906 |
19239 |
+ |
RS270 |
Unspecified |
| scaffold1039 |
19475 |
19547 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
20414 |
20441 |
+ |
(T)n |
Simple_repeat |
| scaffold1039 |
20946 |
21245 |
+ |
RS132 |
Unspecified |
| scaffold1039 |
21239 |
21350 |
+ |
RS132 |
Unspecified |
| scaffold1039 |
21779 |
21873 |
+ |
(GGAGTA)n |
Simple_repeat |
| scaffold1039 |
22748 |
22867 |
+ |
RS132 |
Unspecified |
| scaffold1039 |
23203 |
23240 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
23594 |
24019 |
- |
RS458 |
Unspecified |
| scaffold1039 |
24146 |
24494 |
+ |
RS1919 |
Unspecified |
| scaffold1039 |
24429 |
24676 |
- |
RS4864 |
Unspecified |
| scaffold1039 |
24826 |
25039 |
+ |
RS11616 |
Unspecified |
| scaffold1039 |
25063 |
25271 |
+ |
RS7087 |
Unspecified |
| scaffold1039 |
25906 |
25939 |
+ |
(ATCTCCC)n |
Simple_repeat |
| scaffold1039 |
26290 |
26343 |
+ |
(ATT)n |
Simple_repeat |
| scaffold1039 |
26394 |
26540 |
+ |
RS6371 |
Unspecified |
| scaffold1039 |
27184 |
27425 |
+ |
RS114 |
Unspecified |
| scaffold1039 |
27862 |
27937 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1039 |
28075 |
28267 |
+ |
PL942 |
Unspecified |
| scaffold1039 |
28355 |
28564 |
- |
RS18 |
Unspecified |
| scaffold1039 |
29038 |
29090 |
+ |
PL942 |
Unspecified |
| scaffold1039 |
29386 |
30118 |
- |
PL209 |
Unspecified |
| scaffold1039 |
30127 |
30438 |
- |
PL942 |
Unspecified |
| scaffold1039 |
30595 |
30603 |
+ |
(TCATTTT)n |
Simple_repeat |
| scaffold1039 |
30604 |
30626 |
+ |
(T)n |
Simple_repeat |
| scaffold1039 |
30627 |
30633 |
+ |
(TCATTTT)n |
Simple_repeat |
| scaffold1039 |
30644 |
30680 |
+ |
(AT)n |
Simple_repeat |
| scaffold1039 |
31159 |
31728 |
- |
PL268 |
Unspecified |
| scaffold1039 |
31931 |
31947 |
+ |
(T)n |
Simple_repeat |
| scaffold1039 |
32473 |
32509 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold1039 |
32626 |
33302 |
- |
PL265 |
Unspecified |
| scaffold1039 |
34053 |
34307 |
- |
RS41 |
Unspecified |
| scaffold1039 |
35318 |
35375 |
+ |
GA-rich |
Low_complexity |
| scaffold1039 |
36328 |
36468 |
- |
RS41 |
Unspecified |
| scaffold1039 |
36495 |
36917 |
+ |
PL105 |
Unspecified |
| scaffold1039 |
39385 |
39515 |
- |
RS14765 |
Unspecified |
| scaffold1039 |
40195 |
40242 |
+ |
(TTTATTA)n |
Simple_repeat |
| scaffold1039 |
40426 |
40606 |
- |
RS13008 |
Unspecified |
| scaffold1039 |
40748 |
40831 |
- |
RS11737 |
Unspecified |
| scaffold1039 |
41035 |
42685 |
- |
Copia-30-I_VV |
LTR/Copia |
| scaffold1039 |
43045 |
44323 |
- |
Copia-30-I_VV |
LTR/Copia |
| scaffold1039 |
44438 |
44481 |
+ |
(ACCTCG)n |
Simple_repeat |
| scaffold1039 |
44687 |
45307 |
- |
Copia-30-I_VV |
LTR/Copia |
| scaffold1039 |
45698 |
45823 |
- |
RS11737 |
Unspecified |
| scaffold1039 |
46351 |
46436 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold1039 |
46800 |
46821 |
+ |
(TATT)n |
Simple_repeat |
| scaffold1039 |
47033 |
47057 |
+ |
(T)n |
Simple_repeat |
| scaffold1039 |
47354 |
47520 |
+ |
RS14660 |
Unspecified |
| scaffold1039 |
47724 |
48500 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold1039 |
47835 |
47920 |
+ |
Copia-82_BRa-I |
LTR/Copia |
| scaffold1039 |
48201 |
48277 |
+ |
Copia-82_BRa-I |
LTR/Copia |
| scaffold1039 |
48858 |
50104 |
+ |
ATCopia26I |
LTR/Copia |
| scaffold1039 |
50412 |
52088 |
+ |
Copia-31_GM-I |
LTR/Copia |
| scaffold1039 |
52081 |
52245 |
+ |
RS14660 |
Unspecified |
| scaffold1039 |
52541 |
52594 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
52671 |
52715 |
+ |
(TCTTCA)n |
Simple_repeat |
| scaffold1039 |
54005 |
54260 |
+ |
RS18 |
Unspecified |
| scaffold1039 |
54850 |
55086 |
- |
RS109 |
Unspecified |
| scaffold1039 |
55290 |
55463 |
- |
RS43 |
Unspecified |
| scaffold1039 |
57049 |
57094 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1039 |
57226 |
57358 |
+ |
RS3933 |
Unspecified |
| scaffold1039 |
57261 |
57390 |
+ |
RS8775 |
Unspecified |
| scaffold1039 |
57655 |
57702 |
+ |
(TTT)n |
Simple_repeat |
| scaffold1039 |
57769 |
57882 |
+ |
RS3886 |
Unspecified |
| scaffold1039 |
58269 |
58316 |
+ |
(TGTAATT)n |
Simple_repeat |
| scaffold1039 |
58487 |
58532 |
+ |
(CGTGTC)n |
Simple_repeat |
| scaffold1039 |
58546 |
58583 |
+ |
RS3886 |
Unspecified |
| scaffold1039 |
59194 |
59228 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold1039 |
59269 |
59307 |
+ |
(AATA)n |
Simple_repeat |
| scaffold1039 |
60411 |
60469 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold1039 |
60810 |
61475 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold1039 |
60813 |
61394 |
+ |
Copia-59_ST-I |
LTR/Copia |
| scaffold1039 |
61495 |
62766 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold1039 |
61861 |
62219 |
+ |
Copia-59_ST-I |
LTR/Copia |
| scaffold1039 |
62292 |
62765 |
+ |
Copia-60_ST-I |
LTR/Copia |
| scaffold1039 |
62768 |
63004 |
+ |
RS8260 |
Unspecified |
| scaffold1039 |
63061 |
63214 |
+ |
RS835 |
Unspecified |
| scaffold1039 |
66396 |
66461 |
- |
RS17802 |
Unspecified |
| scaffold1039 |
66477 |
66690 |
- |
RS1518 |
Unspecified |
| scaffold1039 |
66934 |
67318 |
- |
PL683 |
Unspecified |
| scaffold1039 |
67316 |
67389 |
- |
RS18 |
Unspecified |
| scaffold1039 |
67316 |
67399 |
- |
RS15741 |
Unspecified |
| scaffold1039 |
67606 |
67739 |
+ |
PL688 |
Unspecified |
| scaffold1039 |
68090 |
68109 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
70026 |
70054 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold1039 |
70617 |
70655 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
70895 |
70924 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
71627 |
71791 |
- |
RS8167 |
Unspecified |
| scaffold1039 |
72249 |
72305 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
72347 |
72531 |
- |
RS3756 |
Unspecified |
| scaffold1039 |
75174 |
75217 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold1039 |
75328 |
75584 |
+ |
RS237 |
Unspecified |
| scaffold1039 |
75582 |
75660 |
- |
RS402 |
Unspecified |
| scaffold1039 |
76351 |
76448 |
- |
RS2105 |
Unspecified |
| scaffold1039 |
77039 |
78242 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold1039 |
78231 |
80358 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold1039 |
80362 |
80556 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold1039 |
80553 |
81136 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold1039 |
81174 |
81346 |
+ |
(ACCCG)n |
Simple_repeat |
| scaffold1039 |
82095 |
82136 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold1039 |
82150 |
82967 |
- |
PL171 |
Unspecified |
| scaffold1039 |
83178 |
83243 |
+ |
A-rich |
Low_complexity |
| scaffold1039 |
83537 |
83571 |
+ |
(TATT)n |
Simple_repeat |
| scaffold1039 |
83572 |
83607 |
+ |
(T)n |
Simple_repeat |
| scaffold1039 |
83608 |
83628 |
+ |
(TATT)n |
Simple_repeat |
| scaffold1039 |
83884 |
83905 |
+ |
(T)n |
Simple_repeat |
| scaffold1039 |
84072 |
84119 |
+ |
(TTTCATA)n |
Simple_repeat |
| scaffold1039 |
84604 |
84659 |
+ |
(ATTTTAT)n |
Simple_repeat |
| scaffold1039 |
84779 |
85106 |
- |
RS2105 |
Unspecified |
| scaffold1039 |
85856 |
85886 |
+ |
(TTA)n |
Simple_repeat |
| scaffold1039 |
86338 |
86418 |
+ |
RS10706 |
Unspecified |
| scaffold1039 |
86350 |
86418 |
- |
RS9257 |
Unspecified |
| scaffold1039 |
86975 |
87019 |
+ |
(A)n |
Simple_repeat |
| scaffold1039 |
87130 |
87206 |
+ |
RS1625 |
Unspecified |
| scaffold1039 |
87136 |
87305 |
+ |
(TTCAAT)n |
Simple_repeat |
| scaffold1039 |
87264 |
87305 |
+ |
(TTCAAT)n |
Simple_repeat |
| scaffold1039 |
87797 |
88381 |
- |
RS1858 |
Unspecified |
| scaffold1039 |
88368 |
88605 |
+ |
RS2499 |
Unspecified |
| scaffold1039 |
88779 |
88843 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold1039 |
88943 |
89002 |
+ |
RS1527 |
Unspecified |
| scaffold1039 |
88944 |
89038 |
+ |
RS319 |
Unspecified |
| scaffold1039 |
88972 |
89157 |
+ |
RS319 |
Unspecified |
| scaffold1039 |
89033 |
89182 |
+ |
RS1527 |
Unspecified |
| scaffold1039 |
89124 |
89218 |
+ |
RS319 |
Unspecified |
| scaffold1039 |
89152 |
89337 |
+ |
RS319 |
Unspecified |
| scaffold1039 |
89213 |
89362 |
+ |
RS1527 |
Unspecified |
| scaffold1039 |
89304 |
89398 |
+ |
RS319 |
Unspecified |
| scaffold1039 |
89332 |
90215 |
+ |
RS319 |
Unspecified |
| scaffold1039 |
90345 |
90446 |
+ |
RS6058 |
Unspecified |
| scaffold1039 |
90461 |
90780 |
+ |
RS1649 |
Unspecified |
| scaffold1039 |
91340 |
91384 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold1039 |
91711 |
91763 |
+ |
RS4 |
Unspecified |
| scaffold1039 |
91785 |
91817 |
+ |
(ACAATG)n |
Simple_repeat |
| scaffold1039 |
132580 |
132719 |
+ |
RS16098 |
Unspecified |