scaffold12354 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold12354 |
1 |
33 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
47 |
86 |
+ |
(AAC)n |
Simple_repeat |
| scaffold12354 |
109 |
137 |
+ |
(AAC)n |
Simple_repeat |
| scaffold12354 |
884 |
940 |
- |
hAT-14N2_ZM |
DNA/hAT-Tip100 |
| scaffold12354 |
1425 |
1488 |
- |
hAT-14N2_ZM |
DNA/hAT-Tip100 |
| scaffold12354 |
2716 |
2744 |
+ |
(GTA)n |
Simple_repeat |
| scaffold12354 |
4236 |
4540 |
+ |
PL380 |
Unspecified |
| scaffold12354 |
5688 |
5727 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold12354 |
5774 |
6034 |
- |
RS365 |
Unspecified |
| scaffold12354 |
6079 |
6111 |
+ |
(ATATTG)n |
Simple_repeat |
| scaffold12354 |
6532 |
6567 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
7011 |
7046 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold12354 |
7995 |
8031 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
8041 |
8081 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold12354 |
8232 |
8258 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
8412 |
8466 |
+ |
(TTTTGA)n |
Simple_repeat |
| scaffold12354 |
8515 |
8564 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold12354 |
8777 |
8836 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold12354 |
8895 |
8911 |
+ |
(A)n |
Simple_repeat |
| scaffold12354 |
11128 |
11177 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
12254 |
12270 |
+ |
(A)n |
Simple_repeat |
| scaffold12354 |
13616 |
13819 |
+ |
RS4 |
Unspecified |
| scaffold12354 |
13816 |
13875 |
+ |
RS38 |
Unspecified |
| scaffold12354 |
14789 |
14826 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
15009 |
15036 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
15193 |
15258 |
+ |
(GCATCA)n |
Simple_repeat |
| scaffold12354 |
16014 |
16088 |
+ |
(TAT)n |
Simple_repeat |
| scaffold12354 |
16484 |
16631 |
- |
RS12348 |
Unspecified |
| scaffold12354 |
16533 |
16903 |
+ |
RS3687 |
Unspecified |
| scaffold12354 |
16937 |
17182 |
- |
RS6025 |
Unspecified |
| scaffold12354 |
17096 |
17306 |
+ |
RS4164 |
Unspecified |
| scaffold12354 |
17220 |
17433 |
- |
RS3355 |
Unspecified |
| scaffold12354 |
17281 |
17517 |
+ |
RS4864 |
Unspecified |
| scaffold12354 |
17899 |
18320 |
+ |
RS458 |
Unspecified |
| scaffold12354 |
19599 |
19674 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
20062 |
20097 |
+ |
(CACTTA)n |
Simple_repeat |
| scaffold12354 |
20985 |
21035 |
+ |
(ATA)n |
Simple_repeat |
| scaffold12354 |
21095 |
21154 |
+ |
hAT-3_EPa |
DNA/hAT-Ac |
| scaffold12354 |
21391 |
21424 |
+ |
(AT)n |
Simple_repeat |
| scaffold12354 |
21518 |
21565 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
23206 |
23234 |
+ |
(AT)n |
Simple_repeat |
| scaffold12354 |
23786 |
23814 |
+ |
(A)n |
Simple_repeat |
| scaffold12354 |
24109 |
24161 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
24226 |
24260 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
24378 |
24577 |
+ |
RS267 |
Unspecified |
| scaffold12354 |
24848 |
24877 |
+ |
(TTGACT)n |
Simple_repeat |
| scaffold12354 |
25090 |
25284 |
+ |
RS1186 |
Unspecified |
| scaffold12354 |
25121 |
25363 |
+ |
RS267 |
Unspecified |
| scaffold12354 |
26229 |
26373 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold12354 |
26300 |
26373 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold12354 |
26463 |
26627 |
+ |
RS1436 |
Unspecified |
| scaffold12354 |
26769 |
26935 |
- |
RS1362 |
Unspecified |
| scaffold12354 |
27847 |
27952 |
+ |
RS4475 |
Unspecified |
| scaffold12354 |
27951 |
27981 |
+ |
(TAA)n |
Simple_repeat |
| scaffold12354 |
28805 |
29345 |
- |
PL637 |
Unspecified |
| scaffold12354 |
29830 |
30012 |
+ |
RS7136 |
Unspecified |
| scaffold12354 |
30011 |
30181 |
+ |
PL438 |
Unspecified |
| scaffold12354 |
30032 |
30202 |
- |
PL109 |
Unspecified |
| scaffold12354 |
30372 |
30555 |
+ |
RS2827 |
Unspecified |
| scaffold12354 |
30710 |
30735 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold12354 |
30884 |
30978 |
- |
RS16382 |
Unspecified |
| scaffold12354 |
30888 |
30994 |
- |
PL436 |
Unspecified |
| scaffold12354 |
31561 |
31583 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
31772 |
31836 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold12354 |
33171 |
33210 |
+ |
(ATTCA)n |
Simple_repeat |
| scaffold12354 |
33542 |
33587 |
+ |
(TCATCT)n |
Simple_repeat |
| scaffold12354 |
34301 |
34450 |
+ |
GA-rich |
Low_complexity |
| scaffold12354 |
34596 |
34629 |
+ |
(TTA)n |
Simple_repeat |
| scaffold12354 |
35859 |
36114 |
+ |
RS356 |
Unspecified |
| scaffold12354 |
36130 |
36426 |
- |
RS580 |
Unspecified |
| scaffold12354 |
36430 |
36496 |
+ |
(TTA)n |
Simple_repeat |
| scaffold12354 |
36555 |
36585 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
36903 |
36923 |
+ |
(A)n |
Simple_repeat |
| scaffold12354 |
37130 |
37174 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold12354 |
37265 |
37303 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
37458 |
37523 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
38502 |
38539 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
39551 |
39734 |
+ |
RS11510 |
Unspecified |
| scaffold12354 |
40372 |
40428 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold12354 |
41825 |
41852 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
41882 |
42029 |
+ |
RS917 |
Unspecified |
| scaffold12354 |
42116 |
42172 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold12354 |
42235 |
42291 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold12354 |
43688 |
43715 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
43745 |
44353 |
+ |
RS917 |
Unspecified |
| scaffold12354 |
44465 |
44509 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
45590 |
45759 |
+ |
RS12630 |
Unspecified |
| scaffold12354 |
45804 |
45963 |
+ |
RS11843 |
Unspecified |
| scaffold12354 |
46565 |
46886 |
+ |
RS210 |
Unspecified |
| scaffold12354 |
47356 |
47441 |
- |
RS102 |
Unspecified |
| scaffold12354 |
47649 |
47697 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
47926 |
47955 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
49680 |
50191 |
+ |
RS3441 |
Unspecified |
| scaffold12354 |
50353 |
50531 |
+ |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold12354 |
50545 |
50633 |
- |
PL608 |
Unspecified |
| scaffold12354 |
51135 |
51227 |
+ |
RS129 |
Unspecified |
| scaffold12354 |
51252 |
51311 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
51387 |
51443 |
+ |
(TCCTCCC)n |
Simple_repeat |
| scaffold12354 |
51753 |
51944 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
53562 |
53656 |
+ |
RS16382 |
Unspecified |
| scaffold12354 |
53739 |
53988 |
+ |
RS356 |
Unspecified |
| scaffold12354 |
53966 |
54039 |
- |
RS4300 |
Unspecified |
| scaffold12354 |
54573 |
54602 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold12354 |
54671 |
54726 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
55378 |
55755 |
+ |
Copia-2_SL-LTR |
LTR/Copia |
| scaffold12354 |
56118 |
56167 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
57671 |
57728 |
+ |
(TACA)n |
Simple_repeat |
| scaffold12354 |
59103 |
59147 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
59240 |
60289 |
- |
RS6631 |
Unspecified |
| scaffold12354 |
60435 |
60485 |
+ |
Gypsy-38_STu-I |
LTR/Gypsy |
| scaffold12354 |
60855 |
60899 |
+ |
Gypsy-125_SBi-I |
LTR/Gypsy |
| scaffold12354 |
60912 |
62210 |
- |
RS6631 |
Unspecified |
| scaffold12354 |
63244 |
63269 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
64070 |
64095 |
+ |
(A)n |
Simple_repeat |
| scaffold12354 |
64917 |
64971 |
- |
RS13504 |
Unspecified |
| scaffold12354 |
65451 |
65626 |
+ |
(TA)n |
Simple_repeat |
| scaffold12354 |
65451 |
65529 |
+ |
(TA)n |
Simple_repeat |
| scaffold12354 |
65513 |
65626 |
- |
RS212 |
Unspecified |
| scaffold12354 |
66171 |
66205 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
66292 |
66596 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
66580 |
66596 |
+ |
(T)n |
Simple_repeat |
| scaffold12354 |
66714 |
66989 |
+ |
PL682 |
Unspecified |
| scaffold12354 |
66801 |
67012 |
- |
RS12125 |
Unspecified |
| scaffold12354 |
67042 |
67065 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold12354 |
67110 |
67183 |
+ |
RS10045 |
Unspecified |
| scaffold12354 |
67290 |
67444 |
- |
PL753 |
Unspecified |
| scaffold12354 |
67309 |
67528 |
+ |
PL753 |
Unspecified |
| scaffold12354 |
69481 |
69672 |
+ |
(AAT)n |
Simple_repeat |
| scaffold12354 |
69679 |
69805 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold12354 |
70006 |
70063 |
+ |
(CAT)n |
Simple_repeat |
| scaffold12354 |
70805 |
70853 |
+ |
(CCGGC)n |
Simple_repeat |
| scaffold12354 |
71540 |
71614 |
- |
RS5996 |
Unspecified |
| scaffold12354 |
71649 |
71723 |
+ |
(TTTGAACCGT)n |
Simple_repeat |
| scaffold12354 |
71762 |
71895 |
+ |
(GACCCG)n |
Simple_repeat |
| scaffold12354 |
72374 |
72465 |
+ |
RS84 |
Unspecified |
| scaffold12354 |
72782 |
72825 |
+ |
(AATA)n |
Simple_repeat |
| scaffold12354 |
72956 |
73025 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
74034 |
74194 |
+ |
Copia-77_PT-I |
LTR/Copia |
| scaffold12354 |
74230 |
74362 |
+ |
Copia-77_PT-I |
LTR/Copia |
| scaffold12354 |
74637 |
74670 |
+ |
(CGTGTT)n |
Simple_repeat |
| scaffold12354 |
75184 |
75268 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold12354 |
76292 |
76322 |
+ |
(AACCAT)n |
Simple_repeat |
| scaffold12354 |
76514 |
76680 |
+ |
RS13504 |
Unspecified |
| scaffold12354 |
78166 |
78192 |
+ |
(TAATGC)n |
Simple_repeat |
| scaffold12354 |
78946 |
79012 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold12354 |
79760 |
79795 |
+ |
RS4890 |
Unspecified |
| scaffold12354 |
79812 |
79954 |
+ |
RS4890 |
Unspecified |
| scaffold12354 |
80962 |
81144 |
+ |
RS4890 |
Unspecified |
| scaffold12354 |
81548 |
81598 |
+ |
(AACTTTT)n |
Simple_repeat |
| scaffold12354 |
81811 |
81834 |
+ |
(CATG)n |
Simple_repeat |
| scaffold12354 |
82161 |
82213 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
82235 |
82658 |
- |
PL580 |
Unspecified |
| scaffold12354 |
83234 |
83268 |
+ |
(TATATT)n |
Simple_repeat |
| scaffold12354 |
83302 |
83334 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold12354 |
83335 |
83340 |
+ |
(TTATTTT)n |
Simple_repeat |
| scaffold12354 |
84555 |
84636 |
+ |
(ATT)n |
Simple_repeat |
| scaffold12354 |
84658 |
84753 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold12354 |
84893 |
84973 |
- |
RS17638 |
Unspecified |
| scaffold12354 |
84971 |
85050 |
- |
RS726 |
Unspecified |
| scaffold12354 |
85366 |
85549 |
+ |
RS4890 |
Unspecified |
| scaffold12354 |
86010 |
86037 |
+ |
(CTTT)n |
Simple_repeat |
| scaffold12354 |
86555 |
86660 |
+ |
(AATGAA)n |
Simple_repeat |
| scaffold12354 |
86612 |
86668 |
+ |
(AATGAG)n |
Simple_repeat |
| scaffold12354 |
88288 |
88668 |
- |
Copia-65_Mad-I |
LTR/Copia |
| scaffold12354 |
91727 |
91779 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold12354 |
92213 |
92625 |
+ |
PL508 |
Unspecified |
| scaffold12354 |
92624 |
93791 |
+ |
RS500 |
Unspecified |
| scaffold12354 |
94506 |
94699 |
+ |
RS176 |
Unspecified |
| scaffold12354 |
94565 |
94717 |
- |
RS851 |
Unspecified |
| scaffold12354 |
96549 |
96610 |
+ |
(TATATAC)n |
Simple_repeat |
| scaffold12354 |
96549 |
96708 |
+ |
(TATATAC)n |
Simple_repeat |
| scaffold12354 |
96594 |
96708 |
- |
RS212 |
Unspecified |
| scaffold12354 |
97328 |
97333 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold12354 |
97334 |
97379 |
+ |
(TTTATTA)n |
Simple_repeat |
| scaffold12354 |
97841 |
98023 |
+ |
RS4890 |
Unspecified |
| scaffold12354 |
98055 |
98123 |
- |
PL92 |
Unspecified |
| scaffold12354 |
99339 |
99378 |
+ |
(TTAG)n |
Simple_repeat |
| scaffold12354 |
99410 |
99444 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
100235 |
100271 |
+ |
(GAT)n |
Simple_repeat |
| scaffold12354 |
100772 |
100860 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold12354 |
100924 |
101686 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
100924 |
100971 |
+ |
A-rich |
Low_complexity |
| scaffold12354 |
100961 |
101686 |
+ |
RS1269 |
Unspecified |
| scaffold12354 |
101694 |
101808 |
+ |
(A)n |
Simple_repeat |
| scaffold12354 |
101694 |
102015 |
+ |
(A)n |
Simple_repeat |
| scaffold12354 |
101753 |
102015 |
+ |
RS1604 |
Unspecified |