scaffold1881 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1881 |
496 |
577 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
998 |
1692 |
+ |
(AAGTAT)n |
Simple_repeat |
| scaffold1881 |
998 |
1040 |
+ |
(AAGTAT)n |
Simple_repeat |
| scaffold1881 |
1022 |
1692 |
- |
RS14 |
Unspecified |
| scaffold1881 |
1294 |
1828 |
+ |
RS403 |
Unspecified |
| scaffold1881 |
1943 |
2014 |
+ |
(ATTGCTT)n |
Simple_repeat |
| scaffold1881 |
2344 |
2943 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold1881 |
3251 |
3595 |
+ |
RS224 |
Unspecified |
| scaffold1881 |
5214 |
5271 |
+ |
(AGTAAT)n |
Simple_repeat |
| scaffold1881 |
5320 |
5388 |
+ |
LINE1-16_ZM |
LINE/L1 |
| scaffold1881 |
5406 |
5430 |
+ |
(ATC)n |
Simple_repeat |
| scaffold1881 |
6337 |
6360 |
+ |
(GCT)n |
Simple_repeat |
| scaffold1881 |
7294 |
7604 |
+ |
RS340 |
Unspecified |
| scaffold1881 |
7603 |
7704 |
+ |
RS12610 |
Unspecified |
| scaffold1881 |
8148 |
8477 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
8410 |
8477 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
9118 |
9154 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold1881 |
9479 |
9507 |
+ |
(A)n |
Simple_repeat |
| scaffold1881 |
9533 |
9634 |
+ |
(ACCTG)n |
Simple_repeat |
| scaffold1881 |
10007 |
10174 |
+ |
RS3077 |
Unspecified |
| scaffold1881 |
11104 |
11164 |
+ |
SINE2-1_STu |
SINE/tRNA |
| scaffold1881 |
16776 |
16940 |
+ |
RS12610 |
Unspecified |
| scaffold1881 |
17447 |
17610 |
- |
RS4913 |
Unspecified |
| scaffold1881 |
18146 |
18271 |
- |
RS9035 |
Unspecified |
| scaffold1881 |
18404 |
18456 |
+ |
(A)n |
Simple_repeat |
| scaffold1881 |
18551 |
18625 |
+ |
(A)n |
Simple_repeat |
| scaffold1881 |
18728 |
18942 |
+ |
RS15535 |
Unspecified |
| scaffold1881 |
19188 |
19357 |
- |
RS13116 |
Unspecified |
| scaffold1881 |
19455 |
19724 |
- |
RS3073 |
Unspecified |
| scaffold1881 |
19559 |
19754 |
+ |
RS4654 |
Unspecified |
| scaffold1881 |
19820 |
19939 |
+ |
RS9001 |
Unspecified |
| scaffold1881 |
23131 |
23174 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold1881 |
23450 |
23711 |
+ |
RS12705 |
Unspecified |
| scaffold1881 |
25011 |
25178 |
+ |
RS12610 |
Unspecified |
| scaffold1881 |
27623 |
27743 |
+ |
RS14522 |
Unspecified |
| scaffold1881 |
27900 |
28007 |
+ |
RS11492 |
Unspecified |
| scaffold1881 |
28124 |
28162 |
+ |
(ATCATA)n |
Simple_repeat |
| scaffold1881 |
28950 |
28991 |
+ |
RS322 |
Unspecified |
| scaffold1881 |
28984 |
29278 |
+ |
RS15463 |
Unspecified |
| scaffold1881 |
29275 |
29419 |
+ |
RS322 |
Unspecified |
| scaffold1881 |
29527 |
29635 |
+ |
PL513 |
Unspecified |
| scaffold1881 |
30420 |
30731 |
+ |
RS8525 |
Unspecified |
| scaffold1881 |
31520 |
31641 |
+ |
PL541 |
Unspecified |
| scaffold1881 |
32422 |
32463 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
32770 |
32958 |
- |
RS388 |
Unspecified |
| scaffold1881 |
33571 |
33623 |
+ |
MuDR-7_VV |
DNA/MULE-MuDR |
| scaffold1881 |
33673 |
34139 |
- |
RS5550 |
Unspecified |
| scaffold1881 |
34148 |
34250 |
- |
RS4615 |
Unspecified |
| scaffold1881 |
34335 |
34441 |
- |
RS4762 |
Unspecified |
| scaffold1881 |
34457 |
34630 |
- |
RS5042 |
Unspecified |
| scaffold1881 |
34523 |
34653 |
- |
RS9247 |
Unspecified |
| scaffold1881 |
34972 |
35163 |
+ |
RS4 |
Unspecified |
| scaffold1881 |
35273 |
35307 |
+ |
(GTCGT)n |
Simple_repeat |
| scaffold1881 |
37632 |
37666 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
37867 |
37885 |
+ |
(TAA)n |
Simple_repeat |
| scaffold1881 |
38165 |
38268 |
+ |
RS2293 |
Unspecified |
| scaffold1881 |
38312 |
38427 |
+ |
RS16401 |
Unspecified |
| scaffold1881 |
38779 |
38940 |
- |
RS580 |
Unspecified |
| scaffold1881 |
38944 |
38971 |
+ |
(AT)n |
Simple_repeat |
| scaffold1881 |
39436 |
39553 |
+ |
(TAGTAA)n |
Simple_repeat |
| scaffold1881 |
39631 |
39702 |
+ |
(AATATTA)n |
Simple_repeat |
| scaffold1881 |
39849 |
39898 |
+ |
PL850 |
Unspecified |
| scaffold1881 |
40028 |
40058 |
+ |
(A)n |
Simple_repeat |
| scaffold1881 |
41125 |
41256 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
41393 |
41439 |
+ |
(AATTTTG)n |
Simple_repeat |
| scaffold1881 |
43622 |
43664 |
+ |
(TCAAT)n |
Simple_repeat |
| scaffold1881 |
46408 |
46605 |
+ |
RS18 |
Unspecified |
| scaffold1881 |
46713 |
46734 |
+ |
(CT)n |
Simple_repeat |
| scaffold1881 |
46804 |
46885 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1881 |
47003 |
47335 |
+ |
RS1492 |
Unspecified |
| scaffold1881 |
47676 |
47769 |
+ |
RS4475 |
Unspecified |
| scaffold1881 |
51300 |
51348 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold1881 |
53964 |
54210 |
+ |
PL854 |
Unspecified |
| scaffold1881 |
54289 |
54430 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold1881 |
54542 |
54593 |
- |
IBGypsy1_I-int |
LTR/Gypsy |
| scaffold1881 |
54718 |
54797 |
+ |
RS2103 |
Unspecified |
| scaffold1881 |
54773 |
54921 |
- |
RS1240 |
Unspecified |
| scaffold1881 |
54935 |
55398 |
+ |
PL854 |
Unspecified |
| scaffold1881 |
55407 |
55491 |
- |
RS1452 |
Unspecified |
| scaffold1881 |
56002 |
56098 |
+ |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold1881 |
56244 |
56279 |
+ |
IBGypsy1_I-int |
LTR/Gypsy |
| scaffold1881 |
56534 |
56779 |
+ |
RS4820 |
Unspecified |
| scaffold1881 |
56829 |
56932 |
+ |
RS2240 |
Unspecified |
| scaffold1881 |
57147 |
57199 |
+ |
IBGypsy1_I-int |
LTR/Gypsy |
| scaffold1881 |
57196 |
57265 |
+ |
RS1452 |
Unspecified |
| scaffold1881 |
57269 |
57378 |
- |
RS18024 |
Unspecified |
| scaffold1881 |
57381 |
57668 |
+ |
RS1240 |
Unspecified |
| scaffold1881 |
57961 |
58095 |
+ |
RS2021 |
Unspecified |
| scaffold1881 |
58099 |
58353 |
- |
RS1240 |
Unspecified |
| scaffold1881 |
58353 |
58727 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1881 |
58359 |
58478 |
- |
LINE1-46_ZM |
LINE/L1 |
| scaffold1881 |
58829 |
58871 |
+ |
(TC)n |
Simple_repeat |
| scaffold1881 |
59774 |
59795 |
+ |
(A)n |
Simple_repeat |
| scaffold1881 |
60401 |
60447 |
+ |
(TTTTTTG)n |
Simple_repeat |
| scaffold1881 |
60625 |
60889 |
+ |
RS356 |
Unspecified |
| scaffold1881 |
61460 |
61480 |
+ |
(TAATTA)n |
Simple_repeat |
| scaffold1881 |
61481 |
61509 |
+ |
(ATT)n |
Simple_repeat |
| scaffold1881 |
61510 |
61532 |
+ |
(TAATTA)n |
Simple_repeat |
| scaffold1881 |
61705 |
61935 |
- |
RS217 |
Unspecified |
| scaffold1881 |
61932 |
62021 |
+ |
RS649 |
Unspecified |
| scaffold1881 |
62091 |
62124 |
- |
ATENSPM1 |
DNA/CMC-EnSpm |
| scaffold1881 |
62125 |
62183 |
- |
ATENSAT1 |
Satellite |
| scaffold1881 |
62584 |
62612 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold1881 |
63052 |
63330 |
- |
RS11758 |
Unspecified |
| scaffold1881 |
63400 |
63503 |
- |
RS2485 |
Unspecified |
| scaffold1881 |
63726 |
63841 |
+ |
RS2956 |
Unspecified |
| scaffold1881 |
64303 |
64353 |
+ |
(ATTAACA)n |
Simple_repeat |
| scaffold1881 |
64687 |
64713 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold1881 |
65629 |
65662 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
65856 |
66052 |
- |
RS215 |
Unspecified |
| scaffold1881 |
66027 |
66116 |
+ |
RS884 |
Unspecified |
| scaffold1881 |
66027 |
66071 |
+ |
RS311 |
Unspecified |
| scaffold1881 |
66205 |
66237 |
+ |
(TAATGA)n |
Simple_repeat |
| scaffold1881 |
66701 |
66858 |
+ |
RS311 |
Unspecified |
| scaffold1881 |
66948 |
66990 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
68018 |
68077 |
+ |
RS15392 |
Unspecified |
| scaffold1881 |
68139 |
68180 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold1881 |
68248 |
68505 |
+ |
RS237 |
Unspecified |
| scaffold1881 |
68708 |
68826 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1881 |
68708 |
68781 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1881 |
68772 |
68858 |
+ |
(AATA)n |
Simple_repeat |
| scaffold1881 |
68819 |
68858 |
+ |
(AATA)n |
Simple_repeat |
| scaffold1881 |
69297 |
69566 |
- |
RS356 |
Unspecified |
| scaffold1881 |
69454 |
69581 |
- |
RS1172 |
Unspecified |
| scaffold1881 |
69815 |
69866 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1881 |
69867 |
69943 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1881 |
70445 |
70511 |
- |
STOWAWAY12_SB |
DNA/TcMar-Stowaway |
| scaffold1881 |
72119 |
72153 |
+ |
(AATAC)n |
Simple_repeat |
| scaffold1881 |
72545 |
72601 |
- |
BvL1-2 |
LINE/L1 |
| scaffold1881 |
73163 |
73417 |
- |
RS2837 |
Unspecified |
| scaffold1881 |
73915 |
73981 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
74536 |
74599 |
+ |
(TA)n |
Simple_repeat |
| scaffold1881 |
74615 |
74651 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
75896 |
76180 |
+ |
RS1095 |
Unspecified |
| scaffold1881 |
76462 |
76699 |
+ |
RS4 |
Unspecified |
| scaffold1881 |
76978 |
77156 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold1881 |
77435 |
77476 |
+ |
GA-rich |
Low_complexity |
| scaffold1881 |
77754 |
77795 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
77850 |
78365 |
- |
RS3354 |
Unspecified |
| scaffold1881 |
78473 |
78746 |
- |
RS109 |
Unspecified |
| scaffold1881 |
78745 |
78831 |
- |
RS2504 |
Unspecified |
| scaffold1881 |
79189 |
79291 |
- |
RS4475 |
Unspecified |
| scaffold1881 |
79309 |
79431 |
- |
RS5081 |
Unspecified |
| scaffold1881 |
79410 |
79508 |
- |
RS10011 |
Unspecified |
| scaffold1881 |
79764 |
79864 |
+ |
LT1_EPa |
LTR? |
| scaffold1881 |
80491 |
80582 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold1881 |
82498 |
82535 |
+ |
(GAATATT)n |
Simple_repeat |
| scaffold1881 |
84512 |
84722 |
+ |
RS12788 |
Unspecified |
| scaffold1881 |
84774 |
84963 |
+ |
RS6502 |
Unspecified |
| scaffold1881 |
85113 |
85144 |
+ |
(CCCCCG)n |
Simple_repeat |
| scaffold1881 |
85157 |
85384 |
+ |
RS95 |
Unspecified |
| scaffold1881 |
85837 |
85948 |
- |
RS16382 |
Unspecified |
| scaffold1881 |
85851 |
85948 |
+ |
RS4475 |
Unspecified |
| scaffold1881 |
87558 |
87946 |
- |
RS29 |
Unspecified |
| scaffold1881 |
88545 |
88610 |
+ |
(CCA)n |
Simple_repeat |
| scaffold1881 |
88718 |
88753 |
+ |
(AATTCTA)n |
Simple_repeat |
| scaffold1881 |
88912 |
89018 |
+ |
(TAT)n |
Simple_repeat |
| scaffold1881 |
89264 |
89305 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold1881 |
90822 |
90917 |
- |
PL760 |
Unspecified |
| scaffold1881 |
90907 |
91112 |
+ |
RS14213 |
Unspecified |
| scaffold1881 |
91656 |
91826 |
- |
RS7560 |
Unspecified |
| scaffold1881 |
91857 |
91893 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
91893 |
91927 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold1881 |
92136 |
92174 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1881 |
92286 |
92536 |
- |
RS1780 |
Unspecified |
| scaffold1881 |
93044 |
93249 |
- |
RS28 |
Unspecified |
| scaffold1881 |
93252 |
93457 |
- |
RS1746 |
Unspecified |
| scaffold1881 |
93539 |
93577 |
+ |
(TTTAC)n |
Simple_repeat |
| scaffold1881 |
93834 |
93850 |
+ |
(T)n |
Simple_repeat |
| scaffold1881 |
94216 |
94287 |
+ |
(ATGAGTT)n |
Simple_repeat |
| scaffold1881 |
94602 |
94788 |
- |
RS324 |
Unspecified |
| scaffold1881 |
95194 |
95919 |
+ |
RS15 |
Unspecified |
| scaffold1881 |
96372 |
98021 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold1881 |
98228 |
98678 |
+ |
Atlantys2_I-int |
LTR/Gypsy |
| scaffold1881 |
98698 |
99347 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold1881 |
99348 |
100185 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold1881 |
99745 |
99965 |
+ |
RS184 |
Unspecified |
| scaffold1881 |
100243 |
100382 |
+ |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold1881 |
101022 |
101449 |
+ |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold1881 |
101459 |
101929 |
+ |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold1881 |
101976 |
102620 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold1881 |
101982 |
102619 |
+ |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold1881 |
102654 |
103208 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold1881 |
102693 |
102964 |
+ |
Gret1_I-int |
LTR/Gypsy |
| scaffold1881 |
103668 |
103704 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
103842 |
103913 |
+ |
(CATAA)n |
Simple_repeat |
| scaffold1881 |
104155 |
104218 |
+ |
(CACCAG)n |
Simple_repeat |
| scaffold1881 |
106960 |
107084 |
+ |
SZ-25_LTR |
LTR/Copia |
| scaffold1881 |
107822 |
107849 |
+ |
(TTC)n |
Simple_repeat |
| scaffold1881 |
108448 |
108464 |
+ |
(A)n |
Simple_repeat |
| scaffold1881 |
110952 |
111000 |
+ |
(TCTT)n |
Simple_repeat |
| scaffold1881 |
114522 |
115688 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold1881 |
114655 |
115505 |
+ |
L1-13_Mad |
LINE/L1 |
| scaffold1881 |
115904 |
115979 |
+ |
VLINE3_VV |
LINE/L1 |
| scaffold1881 |
117551 |
117567 |
+ |
(A)n |
Simple_repeat |
| scaffold1881 |
119094 |
119296 |
- |
RS1362 |
Unspecified |
| scaffold1881 |
121180 |
121352 |
+ |
RS288 |
Unspecified |
| scaffold1881 |
123979 |
124462 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold1881 |
124713 |
125186 |
+ |
RS10439 |
Unspecified |
| scaffold1881 |
124978 |
125312 |
+ |
RS12711 |
Unspecified |
| scaffold1881 |
125020 |
125363 |
+ |
RS14470 |
Unspecified |
| scaffold1881 |
125765 |
125812 |
+ |
(CATA)n |
Simple_repeat |
| scaffold1881 |
126791 |
126840 |
+ |
A-rich |
Low_complexity |
| scaffold1881 |
130286 |
130472 |
+ |
RS535 |
Unspecified |
| scaffold1881 |
131274 |
131312 |
+ |
(ACACAAT)n |
Simple_repeat |
| scaffold1881 |
132387 |
132448 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold1881 |
132616 |
133125 |
+ |
RS8870 |
Unspecified |
| scaffold1881 |
133305 |
134030 |
+ |
RS530 |
Unspecified |
| scaffold1881 |
133433 |
134063 |
+ |
PL219 |
Unspecified |
| scaffold1881 |
134822 |
134921 |
+ |
ATHILA-6_SBi-I |
LTR/Gypsy |