scaffold19106 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold19106 |
1 |
256 |
- |
RS9286 |
Unspecified |
| scaffold19106 |
306 |
379 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19106 |
449 |
539 |
+ |
G-rich |
Low_complexity |
| scaffold19106 |
540 |
792 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19106 |
1448 |
1512 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold19106 |
1684 |
1855 |
+ |
RS2236 |
Unspecified |
| scaffold19106 |
1899 |
1960 |
+ |
(TTA)n |
Simple_repeat |
| scaffold19106 |
2600 |
2648 |
+ |
(AATTAT)n |
Simple_repeat |
| scaffold19106 |
2764 |
3136 |
+ |
RS934 |
Unspecified |
| scaffold19106 |
2811 |
2852 |
+ |
RS1898 |
Unspecified |
| scaffold19106 |
2879 |
3301 |
+ |
RS4104 |
Unspecified |
| scaffold19106 |
3474 |
3495 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold19106 |
3780 |
3840 |
- |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold19106 |
4320 |
4338 |
+ |
(TA)n |
Simple_repeat |
| scaffold19106 |
4581 |
4764 |
- |
RS2319 |
Unspecified |
| scaffold19106 |
4856 |
4914 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold19106 |
6774 |
7004 |
- |
TPN1_IN |
DNA/CMC-EnSpm |
| scaffold19106 |
6933 |
7047 |
+ |
TPN1_IN |
DNA/CMC-EnSpm |
| scaffold19106 |
7547 |
7571 |
+ |
(CT)n |
Simple_repeat |
| scaffold19106 |
8154 |
8555 |
- |
RS3075 |
Unspecified |
| scaffold19106 |
8551 |
8609 |
+ |
(CAAGGT)n |
Simple_repeat |
| scaffold19106 |
9796 |
9998 |
+ |
RS12959 |
Unspecified |
| scaffold19106 |
10201 |
10233 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
11655 |
11704 |
+ |
(ATTATT)n |
Simple_repeat |
| scaffold19106 |
11834 |
11892 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
12691 |
12726 |
+ |
(TGAG)n |
Simple_repeat |
| scaffold19106 |
12786 |
12871 |
+ |
RS319 |
Unspecified |
| scaffold19106 |
12867 |
12929 |
+ |
RS319 |
Unspecified |
| scaffold19106 |
13112 |
13365 |
- |
RS373 |
Unspecified |
| scaffold19106 |
13286 |
13825 |
- |
RS373 |
Unspecified |
| scaffold19106 |
14871 |
14941 |
+ |
(TAC)n |
Simple_repeat |
| scaffold19106 |
15016 |
15068 |
+ |
(TCTTCT)n |
Simple_repeat |
| scaffold19106 |
15901 |
16381 |
- |
PL350 |
Unspecified |
| scaffold19106 |
16431 |
16495 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
17016 |
17193 |
+ |
(TAAGTA)n |
Simple_repeat |
| scaffold19106 |
17199 |
17274 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold19106 |
18097 |
18130 |
+ |
(TATT)n |
Simple_repeat |
| scaffold19106 |
18420 |
18703 |
+ |
RS319 |
Unspecified |
| scaffold19106 |
18709 |
18825 |
- |
RS1442 |
Unspecified |
| scaffold19106 |
18970 |
19194 |
+ |
PL304 |
Unspecified |
| scaffold19106 |
19224 |
19294 |
+ |
(TTTTTTA)n |
Simple_repeat |
| scaffold19106 |
19407 |
19459 |
+ |
GA-rich |
Low_complexity |
| scaffold19106 |
19656 |
19696 |
- |
PL304 |
Unspecified |
| scaffold19106 |
19723 |
19773 |
+ |
PL304 |
Unspecified |
| scaffold19106 |
19787 |
19998 |
- |
RS240 |
Unspecified |
| scaffold19106 |
20049 |
20104 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold19106 |
20454 |
20525 |
+ |
(TATTAAC)n |
Simple_repeat |
| scaffold19106 |
20568 |
20616 |
+ |
RS319 |
Unspecified |
| scaffold19106 |
21901 |
21929 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold19106 |
22406 |
22456 |
+ |
(AAC)n |
Simple_repeat |
| scaffold19106 |
29978 |
30010 |
+ |
(AATACC)n |
Simple_repeat |
| scaffold19106 |
30422 |
30472 |
+ |
G-rich |
Low_complexity |
| scaffold19106 |
33639 |
33687 |
- |
Copia10-VV_LTR |
LTR/Copia |
| scaffold19106 |
34862 |
34902 |
- |
TOPIE1_LE_I-int |
LTR/Copia |
| scaffold19106 |
35064 |
35212 |
+ |
RS2174 |
Unspecified |
| scaffold19106 |
35910 |
35962 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold19106 |
38322 |
38396 |
+ |
RS17600 |
Unspecified |
| scaffold19106 |
38346 |
38396 |
- |
RS10 |
Unspecified |
| scaffold19106 |
38353 |
38623 |
- |
RS17600 |
Unspecified |
| scaffold19106 |
38739 |
38759 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
41361 |
41382 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
41953 |
41992 |
+ |
(TTAGTT)n |
Simple_repeat |
| scaffold19106 |
42208 |
42237 |
+ |
(TTC)n |
Simple_repeat |
| scaffold19106 |
42257 |
42289 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19106 |
42394 |
42442 |
+ |
(TGA)n |
Simple_repeat |
| scaffold19106 |
53476 |
53528 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
53672 |
53716 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
53717 |
53740 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
54251 |
54303 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
54365 |
54389 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
57126 |
57156 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
57779 |
57811 |
+ |
G-rich |
Low_complexity |
| scaffold19106 |
57931 |
58055 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold19106 |
60053 |
60194 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold19106 |
60085 |
60194 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold19106 |
63060 |
63158 |
+ |
(TGG)n |
Simple_repeat |
| scaffold19106 |
63295 |
63352 |
+ |
(GGAGGT)n |
Simple_repeat |
| scaffold19106 |
64691 |
64972 |
+ |
RS1746 |
Unspecified |
| scaffold19106 |
64761 |
65049 |
- |
RS1746 |
Unspecified |
| scaffold19106 |
65370 |
65662 |
+ |
RS2386 |
Unspecified |
| scaffold19106 |
66002 |
66046 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
67327 |
67585 |
+ |
RS47 |
Unspecified |
| scaffold19106 |
68467 |
68587 |
+ |
RS11452 |
Unspecified |
| scaffold19106 |
68798 |
69075 |
- |
RS10 |
Unspecified |
| scaffold19106 |
69245 |
69442 |
- |
RS757 |
Unspecified |
| scaffold19106 |
69281 |
69505 |
+ |
RS13348 |
Unspecified |
| scaffold19106 |
69840 |
69873 |
+ |
(GAATCAT)n |
Simple_repeat |
| scaffold19106 |
69974 |
70150 |
+ |
RS5 |
Unspecified |
| scaffold19106 |
70142 |
70435 |
+ |
RS13382 |
Unspecified |
| scaffold19106 |
70179 |
70433 |
- |
RS237 |
Unspecified |
| scaffold19106 |
70677 |
70732 |
+ |
(TTAG)n |
Simple_repeat |
| scaffold19106 |
70872 |
71078 |
+ |
Copia-27_ST-I |
LTR/Copia |
| scaffold19106 |
71532 |
73072 |
+ |
Copia-27_ST-I |
LTR/Copia |
| scaffold19106 |
73116 |
73171 |
+ |
(TTAG)n |
Simple_repeat |
| scaffold19106 |
73548 |
73603 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold19106 |
74031 |
74128 |
- |
RS16382 |
Unspecified |
| scaffold19106 |
74035 |
74144 |
+ |
RS4475 |
Unspecified |
| scaffold19106 |
74360 |
74382 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
74398 |
74417 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
75222 |
75257 |
+ |
(AGAGG)n |
Simple_repeat |
| scaffold19106 |
76251 |
76469 |
+ |
RS537 |
Unspecified |
| scaffold19106 |
77084 |
77453 |
+ |
RS8 |
Unspecified |
| scaffold19106 |
78036 |
78112 |
+ |
(CACTTTA)n |
Simple_repeat |
| scaffold19106 |
78370 |
78443 |
+ |
RS18111 |
Unspecified |
| scaffold19106 |
78797 |
78828 |
+ |
(AAATCTG)n |
Simple_repeat |
| scaffold19106 |
81628 |
81763 |
+ |
RS5 |
Unspecified |
| scaffold19106 |
82442 |
82533 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
82565 |
82608 |
+ |
(CCAC)n |
Simple_repeat |
| scaffold19106 |
82855 |
82913 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
83189 |
83284 |
+ |
RS18022 |
Unspecified |
| scaffold19106 |
83202 |
83363 |
+ |
RS622 |
Unspecified |
| scaffold19106 |
83545 |
83575 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
83612 |
83841 |
- |
RS376 |
Unspecified |
| scaffold19106 |
83759 |
83856 |
+ |
RS3380 |
Unspecified |
| scaffold19106 |
84438 |
85122 |
+ |
PL504 |
Unspecified |
| scaffold19106 |
85124 |
85472 |
- |
RS463 |
Unspecified |
| scaffold19106 |
85599 |
85649 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold19106 |
85655 |
85709 |
+ |
(TTTTAAT)n |
Simple_repeat |
| scaffold19106 |
86056 |
86087 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
87867 |
87954 |
- |
RS4475 |
Unspecified |
| scaffold19106 |
88239 |
88278 |
- |
RS1 |
Unspecified |
| scaffold19106 |
88244 |
88426 |
+ |
RS10 |
Unspecified |
| scaffold19106 |
88679 |
88762 |
+ |
RS10 |
Unspecified |
| scaffold19106 |
88764 |
88816 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
88972 |
89007 |
+ |
(TTTTTCT)n |
Simple_repeat |
| scaffold19106 |
89053 |
89093 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
89403 |
89477 |
- |
RS453 |
Unspecified |
| scaffold19106 |
89977 |
90041 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
90327 |
90366 |
+ |
(TGTGAGT)n |
Simple_repeat |
| scaffold19106 |
91802 |
91837 |
+ |
(TCGTT)n |
Simple_repeat |
| scaffold19106 |
92368 |
92595 |
+ |
RS18 |
Unspecified |
| scaffold19106 |
92756 |
92800 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
94064 |
94211 |
+ |
RS14624 |
Unspecified |
| scaffold19106 |
94494 |
94529 |
+ |
RS482 |
Unspecified |
| scaffold19106 |
94548 |
94639 |
+ |
RS482 |
Unspecified |
| scaffold19106 |
94677 |
95270 |
- |
RS507 |
Unspecified |
| scaffold19106 |
95786 |
95919 |
- |
PL700 |
Unspecified |
| scaffold19106 |
95787 |
95899 |
- |
RS5306 |
Unspecified |
| scaffold19106 |
95935 |
95977 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold19106 |
95996 |
96069 |
- |
PL700 |
Unspecified |
| scaffold19106 |
96074 |
96179 |
+ |
RS324 |
Unspecified |
| scaffold19106 |
96578 |
96615 |
+ |
(ATT)n |
Simple_repeat |
| scaffold19106 |
96728 |
96880 |
+ |
RS178 |
Unspecified |
| scaffold19106 |
97055 |
97072 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
97360 |
97749 |
+ |
PL576 |
Unspecified |
| scaffold19106 |
97617 |
97766 |
+ |
PL317 |
Unspecified |
| scaffold19106 |
98163 |
98336 |
+ |
RS156 |
Unspecified |
| scaffold19106 |
98336 |
98578 |
+ |
RS460 |
Unspecified |
| scaffold19106 |
98579 |
98809 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
98579 |
98606 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
98601 |
98809 |
+ |
RS559 |
Unspecified |
| scaffold19106 |
99864 |
100081 |
- |
RS356 |
Unspecified |
| scaffold19106 |
99864 |
100171 |
+ |
RS586 |
Unspecified |
| scaffold19106 |
100080 |
100191 |
- |
RS7374 |
Unspecified |
| scaffold19106 |
100775 |
100831 |
+ |
RS4 |
Unspecified |
| scaffold19106 |
101476 |
101617 |
- |
RS178 |
Unspecified |
| scaffold19106 |
102672 |
102796 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold19106 |
102830 |
103100 |
- |
RS1 |
Unspecified |
| scaffold19106 |
103011 |
103172 |
+ |
RS17699 |
Unspecified |
| scaffold19106 |
103216 |
103342 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold19106 |
103849 |
103883 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
105278 |
105422 |
- |
RS1857 |
Unspecified |
| scaffold19106 |
107396 |
107457 |
+ |
GA-rich |
Low_complexity |
| scaffold19106 |
107529 |
107724 |
- |
PL9 |
Unspecified |
| scaffold19106 |
108396 |
108482 |
- |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold19106 |
110510 |
110534 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
112585 |
112616 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
112637 |
112780 |
- |
RS5094 |
Unspecified |
| scaffold19106 |
112994 |
113047 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold19106 |
113222 |
113451 |
+ |
RS581 |
Unspecified |
| scaffold19106 |
113525 |
113843 |
+ |
RS3519 |
Unspecified |
| scaffold19106 |
113860 |
114133 |
+ |
RS1 |
Unspecified |
| scaffold19106 |
114132 |
114379 |
- |
RS1 |
Unspecified |
| scaffold19106 |
114297 |
114397 |
+ |
RS16358 |
Unspecified |
| scaffold19106 |
114378 |
114468 |
+ |
RS468 |
Unspecified |
| scaffold19106 |
114685 |
115123 |
+ |
PL352 |
Unspecified |
| scaffold19106 |
116794 |
116820 |
+ |
(A)n |
Simple_repeat |
| scaffold19106 |
118560 |
119017 |
+ |
RS1508 |
Unspecified |
| scaffold19106 |
119013 |
119068 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold19106 |
119668 |
119760 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold19106 |
119797 |
120485 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold19106 |
122143 |
122581 |
+ |
RS1508 |
Unspecified |
| scaffold19106 |
122413 |
122605 |
+ |
RS4690 |
Unspecified |
| scaffold19106 |
123189 |
123242 |
+ |
(ATTATC)n |
Simple_repeat |
| scaffold19106 |
127949 |
128179 |
+ |
RS4 |
Unspecified |
| scaffold19106 |
128714 |
128798 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold19106 |
129722 |
130273 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
129722 |
129767 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
129749 |
130296 |
+ |
(TAT)n |
Simple_repeat |
| scaffold19106 |
130259 |
130296 |
+ |
(TAT)n |
Simple_repeat |
| scaffold19106 |
130606 |
130785 |
- |
RS710 |
Unspecified |
| scaffold19106 |
130811 |
130900 |
+ |
RS16382 |
Unspecified |
| scaffold19106 |
131651 |
131685 |
+ |
(CAAAA)n |
Simple_repeat |
| scaffold19106 |
131688 |
131739 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
132327 |
132526 |
- |
RS1829 |
Unspecified |
| scaffold19106 |
133021 |
133050 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
133345 |
133435 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold19106 |
133616 |
133645 |
+ |
(T)n |
Simple_repeat |
| scaffold19106 |
133754 |
133894 |
- |
PL6 |
Unspecified |
| scaffold19106 |
133892 |
134359 |
- |
PL6 |
Unspecified |
| scaffold19106 |
141567 |
141808 |
- |
RS138 |
Unspecified |
| scaffold19106 |
144101 |
144146 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold19106 |
144477 |
144501 |
+ |
(AATT)n |
Simple_repeat |
| scaffold19106 |
144975 |
145032 |
- |
PL517 |
Unspecified |
| scaffold19106 |
145359 |
145397 |
- |
CUMULE |
DNA/MULE-MuDR |
| scaffold19106 |
146340 |
146428 |
- |
RS4475 |
Unspecified |
| scaffold19106 |
146498 |
146580 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
147184 |
147226 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
147476 |
147570 |
+ |
(ATTAATT)n |
Simple_repeat |
| scaffold19106 |
147745 |
147864 |
+ |
RS606 |
Unspecified |
| scaffold19106 |
147762 |
147864 |
+ |
RS4475 |
Unspecified |
| scaffold19106 |
148386 |
148425 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold19106 |
150012 |
150048 |
+ |
A-rich |
Low_complexity |
| scaffold19106 |
150192 |
150681 |
- |
PL6 |
Unspecified |
| scaffold19106 |
150961 |
151055 |
+ |
(TAATTTA)n |
Simple_repeat |
| scaffold19106 |
151380 |
151459 |
+ |
(TTA)n |
Simple_repeat |
| scaffold19106 |
152365 |
152532 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |