scaffold2554 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2554 |
5 |
477 |
- |
RS5078 |
Unspecified |
| scaffold2554 |
63 |
593 |
- |
RS30 |
Unspecified |
| scaffold2554 |
984 |
1268 |
- |
RS7420 |
Unspecified |
| scaffold2554 |
2472 |
2519 |
+ |
(ACAT)n |
Simple_repeat |
| scaffold2554 |
3465 |
3531 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2554 |
3649 |
3697 |
- |
Gypsy-193_ZM-I |
LTR/Gypsy |
| scaffold2554 |
4560 |
5313 |
- |
RS4481 |
Unspecified |
| scaffold2554 |
5920 |
6213 |
+ |
PL752 |
Unspecified |
| scaffold2554 |
7412 |
8572 |
+ |
RS51 |
Unspecified |
| scaffold2554 |
7842 |
8830 |
- |
RS2700 |
Unspecified |
| scaffold2554 |
8831 |
9268 |
+ |
PL770 |
Unspecified |
| scaffold2554 |
8990 |
9599 |
+ |
RS801 |
Unspecified |
| scaffold2554 |
9603 |
10720 |
+ |
RS200 |
Unspecified |
| scaffold2554 |
10722 |
11345 |
- |
RS838 |
Unspecified |
| scaffold2554 |
14745 |
14786 |
+ |
(AACTATT)n |
Simple_repeat |
| scaffold2554 |
15206 |
15247 |
+ |
(TAATTTA)n |
Simple_repeat |
| scaffold2554 |
15377 |
15767 |
+ |
PL785 |
Unspecified |
| scaffold2554 |
16062 |
16081 |
+ |
(CAT)n |
Simple_repeat |
| scaffold2554 |
16382 |
16423 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
16587 |
16617 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
17289 |
17384 |
+ |
RS878 |
Unspecified |
| scaffold2554 |
17414 |
18079 |
+ |
RS44 |
Unspecified |
| scaffold2554 |
18046 |
18140 |
+ |
RS44 |
Unspecified |
| scaffold2554 |
18656 |
18738 |
+ |
(CAGCAT)n |
Simple_repeat |
| scaffold2554 |
18925 |
19336 |
+ |
RS1976 |
Unspecified |
| scaffold2554 |
19624 |
20520 |
+ |
RS51 |
Unspecified |
| scaffold2554 |
20513 |
20865 |
+ |
RS21 |
Unspecified |
| scaffold2554 |
20878 |
21132 |
- |
RS838 |
Unspecified |
| scaffold2554 |
21068 |
21148 |
+ |
PL843 |
Unspecified |
| scaffold2554 |
21318 |
22349 |
+ |
RS21 |
Unspecified |
| scaffold2554 |
21719 |
22847 |
+ |
RS44 |
Unspecified |
| scaffold2554 |
22632 |
22873 |
+ |
RS44 |
Unspecified |
| scaffold2554 |
22856 |
22931 |
+ |
RS189 |
Unspecified |
| scaffold2554 |
23228 |
23284 |
+ |
(TATAACA)n |
Simple_repeat |
| scaffold2554 |
23263 |
23342 |
+ |
(GCATATAA)n |
Simple_repeat |
| scaffold2554 |
23473 |
23534 |
+ |
PL318 |
Unspecified |
| scaffold2554 |
23480 |
23538 |
+ |
PL389 |
Unspecified |
| scaffold2554 |
24582 |
24630 |
+ |
(ACATA)n |
Simple_repeat |
| scaffold2554 |
24776 |
24801 |
+ |
(CTCAT)n |
Simple_repeat |
| scaffold2554 |
26871 |
27017 |
+ |
(CATA)n |
Simple_repeat |
| scaffold2554 |
26977 |
27025 |
+ |
(ATCCACA)n |
Simple_repeat |
| scaffold2554 |
27447 |
27494 |
+ |
(AC)n |
Simple_repeat |
| scaffold2554 |
27940 |
28001 |
+ |
(ATGACG)n |
Simple_repeat |
| scaffold2554 |
28134 |
28200 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2554 |
28791 |
29402 |
+ |
RS76 |
Unspecified |
| scaffold2554 |
29024 |
29455 |
- |
RS446 |
Unspecified |
| scaffold2554 |
29745 |
29815 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold2554 |
29889 |
29915 |
+ |
(A)n |
Simple_repeat |
| scaffold2554 |
29950 |
31207 |
- |
PL475 |
Unspecified |
| scaffold2554 |
30553 |
31330 |
+ |
RS4087 |
Unspecified |
| scaffold2554 |
32198 |
32301 |
+ |
(TGT)n |
Simple_repeat |
| scaffold2554 |
32302 |
32331 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2554 |
32332 |
32341 |
+ |
(TGT)n |
Simple_repeat |
| scaffold2554 |
32455 |
32566 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2554 |
32569 |
32605 |
+ |
(TTG)n |
Simple_repeat |
| scaffold2554 |
32605 |
33372 |
- |
PL780 |
Unspecified |
| scaffold2554 |
34044 |
34086 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold2554 |
34308 |
34386 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold2554 |
34308 |
34875 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold2554 |
34376 |
34875 |
- |
PL845 |
Unspecified |
| scaffold2554 |
35327 |
35364 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
35886 |
36406 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold2554 |
36837 |
36898 |
+ |
(GTAGTTG)n |
Simple_repeat |
| scaffold2554 |
38193 |
38958 |
- |
PL780 |
Unspecified |
| scaffold2554 |
39537 |
39573 |
+ |
RS830 |
Unspecified |
| scaffold2554 |
39542 |
39821 |
- |
RS535 |
Unspecified |
| scaffold2554 |
39853 |
39922 |
+ |
(AAG)n |
Simple_repeat |
| scaffold2554 |
40089 |
40600 |
+ |
PL351 |
Unspecified |
| scaffold2554 |
40925 |
40956 |
+ |
GA-rich |
Low_complexity |
| scaffold2554 |
40941 |
40984 |
+ |
(ATG)n |
Simple_repeat |
| scaffold2554 |
41070 |
41105 |
+ |
(GTA)n |
Simple_repeat |
| scaffold2554 |
41369 |
42213 |
+ |
RS426 |
Unspecified |
| scaffold2554 |
42200 |
43007 |
- |
RS14 |
Unspecified |
| scaffold2554 |
43009 |
43650 |
- |
RS369 |
Unspecified |
| scaffold2554 |
43674 |
43797 |
- |
PL562 |
Unspecified |
| scaffold2554 |
44009 |
44043 |
- |
PL896 |
Unspecified |
| scaffold2554 |
44694 |
44993 |
+ |
PL787 |
Unspecified |
| scaffold2554 |
45224 |
45323 |
+ |
(CCA)n |
Simple_repeat |
| scaffold2554 |
46220 |
46272 |
+ |
(TATTACA)n |
Simple_repeat |
| scaffold2554 |
47953 |
47994 |
+ |
G-rich |
Low_complexity |
| scaffold2554 |
48137 |
48157 |
+ |
(CAT)n |
Simple_repeat |
| scaffold2554 |
48497 |
49864 |
- |
Gypsy-78-I_ZM |
LTR/Gypsy |
| scaffold2554 |
50124 |
51457 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold2554 |
51643 |
51727 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold2554 |
51857 |
51958 |
- |
Gypsy-19_SB-I |
LTR/Gypsy |
| scaffold2554 |
52929 |
53883 |
+ |
PL538 |
Unspecified |
| scaffold2554 |
53730 |
54904 |
+ |
PL647 |
Unspecified |
| scaffold2554 |
53730 |
55066 |
- |
RS254 |
Unspecified |
| scaffold2554 |
54861 |
56110 |
- |
RS44 |
Unspecified |
| scaffold2554 |
55283 |
56110 |
- |
RS619 |
Unspecified |
| scaffold2554 |
56113 |
56204 |
- |
RS813 |
Unspecified |
| scaffold2554 |
56167 |
56225 |
- |
RS878 |
Unspecified |
| scaffold2554 |
57754 |
57794 |
+ |
(TCATCTC)n |
Simple_repeat |
| scaffold2554 |
58400 |
59283 |
- |
RS44 |
Unspecified |
| scaffold2554 |
58651 |
59681 |
- |
RS21 |
Unspecified |
| scaffold2554 |
60051 |
60125 |
+ |
(TCATCTC)n |
Simple_repeat |
| scaffold2554 |
60217 |
60263 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold2554 |
61275 |
61303 |
+ |
(GATT)n |
Simple_repeat |
| scaffold2554 |
61864 |
61920 |
+ |
(TTCAT)n |
Simple_repeat |
| scaffold2554 |
61941 |
62193 |
+ |
RS838 |
Unspecified |
| scaffold2554 |
62045 |
63871 |
- |
RS21 |
Unspecified |
| scaffold2554 |
62425 |
64250 |
- |
RS200 |
Unspecified |
| scaffold2554 |
63311 |
64827 |
- |
RS801 |
Unspecified |
| scaffold2554 |
64923 |
65913 |
+ |
RS2700 |
Unspecified |
| scaffold2554 |
66148 |
66182 |
+ |
(GATTAA)n |
Simple_repeat |
| scaffold2554 |
68844 |
68900 |
+ |
(TATAACA)n |
Simple_repeat |
| scaffold2554 |
69747 |
69798 |
+ |
(ACTAA)n |
Simple_repeat |
| scaffold2554 |
70443 |
70518 |
- |
PL472 |
Unspecified |
| scaffold2554 |
72274 |
72821 |
- |
PL787 |
Unspecified |
| scaffold2554 |
72816 |
73097 |
- |
PL951 |
Unspecified |
| scaffold2554 |
72893 |
73670 |
+ |
RS169 |
Unspecified |
| scaffold2554 |
73115 |
73670 |
- |
RS30 |
Unspecified |
| scaffold2554 |
75274 |
75314 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold2554 |
75769 |
76536 |
+ |
RS14 |
Unspecified |
| scaffold2554 |
76376 |
77010 |
+ |
PL951 |
Unspecified |
| scaffold2554 |
77022 |
77094 |
+ |
(AATT)n |
Simple_repeat |
| scaffold2554 |
77363 |
77383 |
+ |
(TAA)n |
Simple_repeat |
| scaffold2554 |
77384 |
77431 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
77669 |
77736 |
+ |
(ATTTTAAT)n |
Simple_repeat |
| scaffold2554 |
78005 |
78714 |
- |
RS69 |
Unspecified |
| scaffold2554 |
79565 |
79598 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
79949 |
79994 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
80910 |
80958 |
+ |
(CT)n |
Simple_repeat |
| scaffold2554 |
81656 |
81686 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
81752 |
82131 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
81752 |
81823 |
+ |
A-rich |
Low_complexity |
| scaffold2554 |
81797 |
82131 |
- |
PL164 |
Unspecified |
| scaffold2554 |
82123 |
82223 |
- |
RS369 |
Unspecified |
| scaffold2554 |
82222 |
82868 |
+ |
RS30 |
Unspecified |
| scaffold2554 |
82928 |
83008 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold2554 |
83010 |
83668 |
+ |
PL951 |
Unspecified |
| scaffold2554 |
83681 |
83751 |
+ |
(ATTAACTT)n |
Simple_repeat |
| scaffold2554 |
84020 |
84134 |
+ |
(AACATA)n |
Simple_repeat |
| scaffold2554 |
85278 |
85298 |
+ |
(CAT)n |
Simple_repeat |
| scaffold2554 |
86255 |
86287 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2554 |
86687 |
87214 |
- |
RS846 |
Unspecified |
| scaffold2554 |
87268 |
87300 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold2554 |
88214 |
88258 |
+ |
(TTTAATA)n |
Simple_repeat |
| scaffold2554 |
88246 |
88298 |
+ |
(TATT)n |
Simple_repeat |
| scaffold2554 |
88422 |
89089 |
- |
RS846 |
Unspecified |
| scaffold2554 |
90186 |
90717 |
- |
RS846 |
Unspecified |
| scaffold2554 |
90753 |
90787 |
+ |
(T)n |
Simple_repeat |
| scaffold2554 |
91667 |
91711 |
+ |
(TTTAATA)n |
Simple_repeat |
| scaffold2554 |
91874 |
91925 |
- |
RS846 |
Unspecified |
| scaffold2554 |
92173 |
92194 |
+ |
(ATA)n |
Simple_repeat |
| scaffold2554 |
92329 |
94458 |
+ |
(T)n |
Simple_repeat |
| scaffold2554 |
94415 |
94458 |
+ |
(T)n |
Simple_repeat |
| scaffold2554 |
94964 |
95636 |
- |
GypsO_I-int |
LTR/Gypsy |
| scaffold2554 |
96126 |
96458 |
- |
PL780 |
Unspecified |
| scaffold2554 |
97309 |
97348 |
- |
ATHILA6C_I-int |
LTR/Gypsy |
| scaffold2554 |
97574 |
97651 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold2554 |
98203 |
98243 |
- |
Gypsy19-VV_I-int |
LTR/Gypsy |
| scaffold2554 |
99157 |
99677 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold2554 |
99832 |
100225 |
- |
RS7978 |
Unspecified |
| scaffold2554 |
99885 |
100392 |
+ |
PL945 |
Unspecified |
| scaffold2554 |
100668 |
100761 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold2554 |
101495 |
102061 |
- |
PL780 |
Unspecified |
| scaffold2554 |
102055 |
102108 |
- |
PL780 |
Unspecified |
| scaffold2554 |
102071 |
102693 |
- |
RS1210 |
Unspecified |
| scaffold2554 |
102942 |
102991 |
+ |
(TTCTCT)n |
Simple_repeat |