scaffold28451 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold28451 |
1 |
427 |
+ |
RS4087 |
Unspecified |
| scaffold28451 |
496 |
1779 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold28451 |
1265 |
1312 |
- |
RS3825 |
Unspecified |
| scaffold28451 |
2152 |
2949 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold28451 |
2925 |
3040 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold28451 |
3084 |
3379 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold28451 |
5109 |
5216 |
+ |
RS260 |
Unspecified |
| scaffold28451 |
5420 |
5475 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold28451 |
5887 |
6256 |
- |
RS11648 |
Unspecified |
| scaffold28451 |
6415 |
6514 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold28451 |
6910 |
6952 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold28451 |
8242 |
8259 |
+ |
(TA)n |
Simple_repeat |
| scaffold28451 |
8372 |
8418 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
8689 |
8745 |
+ |
(TTTTTTG)n |
Simple_repeat |
| scaffold28451 |
9089 |
9218 |
+ |
RS8207 |
Unspecified |
| scaffold28451 |
9221 |
9560 |
+ |
RS8207 |
Unspecified |
| scaffold28451 |
10412 |
10488 |
+ |
(ATCTAGT)n |
Simple_repeat |
| scaffold28451 |
10680 |
10810 |
- |
RS7624 |
Unspecified |
| scaffold28451 |
10771 |
10950 |
- |
RS14690 |
Unspecified |
| scaffold28451 |
11138 |
11173 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
11381 |
11665 |
- |
RS1378 |
Unspecified |
| scaffold28451 |
12036 |
12137 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
12228 |
12369 |
+ |
RS1736 |
Unspecified |
| scaffold28451 |
12778 |
12821 |
+ |
(TTTATA)n |
Simple_repeat |
| scaffold28451 |
13019 |
13635 |
- |
RS1872 |
Unspecified |
| scaffold28451 |
13630 |
14817 |
+ |
RS1139 |
Unspecified |
| scaffold28451 |
13859 |
15220 |
+ |
RS2476 |
Unspecified |
| scaffold28451 |
15212 |
16095 |
+ |
RS814 |
Unspecified |
| scaffold28451 |
16347 |
16385 |
+ |
(CATCT)n |
Simple_repeat |
| scaffold28451 |
16750 |
16797 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
16798 |
16803 |
+ |
(AAC)n |
Simple_repeat |
| scaffold28451 |
16819 |
17670 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold28451 |
18716 |
18896 |
- |
PL915 |
Unspecified |
| scaffold28451 |
20564 |
20681 |
+ |
PL599 |
Unspecified |
| scaffold28451 |
21191 |
21288 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold28451 |
21261 |
21310 |
+ |
(ATTTATTG)n |
Simple_repeat |
| scaffold28451 |
21652 |
21673 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
21732 |
22064 |
- |
PL5 |
Unspecified |
| scaffold28451 |
23876 |
23933 |
+ |
(T)n |
Simple_repeat |
| scaffold28451 |
24652 |
24697 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
24788 |
24975 |
- |
RS11253 |
Unspecified |
| scaffold28451 |
25221 |
25758 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold28451 |
25960 |
26512 |
+ |
RS1706 |
Unspecified |
| scaffold28451 |
25966 |
26623 |
+ |
RS661 |
Unspecified |
| scaffold28451 |
26951 |
27067 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold28451 |
28990 |
29521 |
+ |
HAT-3_Mad |
DNA/hAT-Tip100 |
| scaffold28451 |
29963 |
30178 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold28451 |
30121 |
30354 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold28451 |
30509 |
30540 |
+ |
(T)n |
Simple_repeat |
| scaffold28451 |
30661 |
30950 |
+ |
RS6184 |
Unspecified |
| scaffold28451 |
30856 |
31019 |
+ |
RS10064 |
Unspecified |
| scaffold28451 |
31687 |
32211 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold28451 |
33847 |
33866 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
37975 |
38136 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
38112 |
38136 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
38165 |
38312 |
+ |
RS4968 |
Unspecified |
| scaffold28451 |
39242 |
39285 |
+ |
(TC)n |
Simple_repeat |
| scaffold28451 |
39586 |
40014 |
- |
PL700 |
Unspecified |
| scaffold28451 |
40098 |
40418 |
+ |
ATCopia12I |
LTR/Copia |
| scaffold28451 |
40441 |
40481 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold28451 |
42040 |
42087 |
+ |
(GAGATGA)n |
Simple_repeat |
| scaffold28451 |
42357 |
42486 |
- |
RS2294 |
Unspecified |
| scaffold28451 |
45092 |
45379 |
- |
RS10877 |
Unspecified |
| scaffold28451 |
45127 |
45927 |
+ |
RS9282 |
Unspecified |
| scaffold28451 |
46040 |
46069 |
+ |
(TCAAT)n |
Simple_repeat |
| scaffold28451 |
46248 |
46278 |
+ |
(AAAATA)n |
Simple_repeat |
| scaffold28451 |
46391 |
46422 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
46544 |
46697 |
+ |
PL640 |
Unspecified |
| scaffold28451 |
46708 |
46820 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
47427 |
47655 |
+ |
RS416 |
Unspecified |
| scaffold28451 |
47825 |
47868 |
+ |
(T)n |
Simple_repeat |
| scaffold28451 |
48158 |
48204 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold28451 |
48215 |
48356 |
+ |
RS424 |
Unspecified |
| scaffold28451 |
48411 |
48998 |
+ |
RS424 |
Unspecified |
| scaffold28451 |
49000 |
49320 |
+ |
RS841 |
Unspecified |
| scaffold28451 |
49454 |
49480 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
49663 |
49937 |
- |
RS586 |
Unspecified |
| scaffold28451 |
50090 |
50860 |
+ |
Copia-4_GM-I |
LTR/Copia |
| scaffold28451 |
50883 |
51481 |
+ |
Copia-4_GM-I |
LTR/Copia |
| scaffold28451 |
51504 |
52920 |
+ |
Copia-4_GM-I |
LTR/Copia |
| scaffold28451 |
52923 |
53235 |
+ |
RS424 |
Unspecified |
| scaffold28451 |
53220 |
53357 |
- |
RS765 |
Unspecified |
| scaffold28451 |
53339 |
53383 |
+ |
RS2215 |
Unspecified |
| scaffold28451 |
54756 |
54795 |
+ |
(TCATTCA)n |
Simple_repeat |
| scaffold28451 |
54874 |
54967 |
+ |
RS841 |
Unspecified |
| scaffold28451 |
55723 |
55962 |
- |
RS1705 |
Unspecified |
| scaffold28451 |
56273 |
56392 |
- |
RS11863 |
Unspecified |
| scaffold28451 |
56422 |
56769 |
- |
PL262 |
Unspecified |
| scaffold28451 |
56768 |
57029 |
+ |
RS1 |
Unspecified |
| scaffold28451 |
57715 |
57738 |
+ |
(GATG)n |
Simple_repeat |
| scaffold28451 |
57745 |
57801 |
+ |
(CATC)n |
Simple_repeat |
| scaffold28451 |
57879 |
57925 |
+ |
PL327 |
Unspecified |
| scaffold28451 |
57947 |
58006 |
+ |
(AAT)n |
Simple_repeat |
| scaffold28451 |
58022 |
58053 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
58160 |
58270 |
+ |
RS8152 |
Unspecified |
| scaffold28451 |
58395 |
58508 |
- |
PL386 |
Unspecified |
| scaffold28451 |
58549 |
58639 |
- |
PL68 |
Unspecified |
| scaffold28451 |
58698 |
58733 |
+ |
(ATTACAA)n |
Simple_repeat |
| scaffold28451 |
59164 |
59261 |
- |
COP8_I_MT-int |
LTR/Copia |
| scaffold28451 |
60611 |
60741 |
- |
ATCopia34_LTR |
LTR/Copia |
| scaffold28451 |
60654 |
60768 |
- |
RTE-1B_Mad |
LINE/RTE-BovB |
| scaffold28451 |
63474 |
63498 |
+ |
(T)n |
Simple_repeat |
| scaffold28451 |
63751 |
63972 |
- |
RS18 |
Unspecified |
| scaffold28451 |
64627 |
64656 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
65007 |
65277 |
- |
RS10 |
Unspecified |
| scaffold28451 |
65843 |
65985 |
+ |
RS38 |
Unspecified |
| scaffold28451 |
66030 |
66296 |
+ |
RS106 |
Unspecified |
| scaffold28451 |
67303 |
67402 |
- |
RS13463 |
Unspecified |
| scaffold28451 |
68756 |
68782 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
68933 |
69235 |
+ |
PL9 |
Unspecified |
| scaffold28451 |
69788 |
69827 |
+ |
(TTGTTA)n |
Simple_repeat |
| scaffold28451 |
71152 |
71220 |
+ |
(TT)n |
Simple_repeat |
| scaffold28451 |
72372 |
72390 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
76366 |
76484 |
- |
RS10261 |
Unspecified |
| scaffold28451 |
76380 |
76612 |
- |
RS17600 |
Unspecified |
| scaffold28451 |
77278 |
77381 |
+ |
RS9910 |
Unspecified |
| scaffold28451 |
77958 |
78061 |
+ |
RS9910 |
Unspecified |
| scaffold28451 |
80185 |
80221 |
+ |
(AGTCCAT)n |
Simple_repeat |
| scaffold28451 |
80352 |
80455 |
+ |
RS9910 |
Unspecified |
| scaffold28451 |
81525 |
81552 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold28451 |
82011 |
82034 |
+ |
(TGA)n |
Simple_repeat |
| scaffold28451 |
83369 |
83393 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
85121 |
85387 |
- |
RS10 |
Unspecified |
| scaffold28451 |
85422 |
85516 |
- |
RS15240 |
Unspecified |
| scaffold28451 |
85588 |
85667 |
- |
RS15240 |
Unspecified |
| scaffold28451 |
86133 |
86200 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold28451 |
86762 |
86791 |
+ |
(T)n |
Simple_repeat |
| scaffold28451 |
87638 |
87823 |
- |
RS38 |
Unspecified |
| scaffold28451 |
93593 |
93771 |
+ |
PL886 |
Unspecified |
| scaffold28451 |
94190 |
94476 |
- |
RS17600 |
Unspecified |
| scaffold28451 |
94486 |
94528 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
94870 |
94909 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
95744 |
95768 |
+ |
(T)n |
Simple_repeat |
| scaffold28451 |
96076 |
96174 |
+ |
RS4475 |
Unspecified |
| scaffold28451 |
96089 |
96185 |
+ |
RS13929 |
Unspecified |
| scaffold28451 |
96753 |
96777 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold28451 |
96797 |
97058 |
+ |
RS365 |
Unspecified |
| scaffold28451 |
97779 |
97825 |
+ |
(ATTGT)n |
Simple_repeat |
| scaffold28451 |
98897 |
98926 |
+ |
(AAC)n |
Simple_repeat |
| scaffold28451 |
101510 |
101606 |
- |
RS4475 |
Unspecified |
| scaffold28451 |
101872 |
101908 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold28451 |
102292 |
102975 |
+ |
PL262 |
Unspecified |
| scaffold28451 |
103429 |
103478 |
+ |
(ATAG)n |
Simple_repeat |
| scaffold28451 |
104031 |
104061 |
+ |
(T)n |
Simple_repeat |
| scaffold28451 |
104234 |
104276 |
- |
RS38 |
Unspecified |
| scaffold28451 |
104360 |
104447 |
- |
RS93 |
Unspecified |
| scaffold28451 |
104541 |
104563 |
+ |
(CCAC)n |
Simple_repeat |
| scaffold28451 |
105000 |
105026 |
+ |
(CGT)n |
Simple_repeat |
| scaffold28451 |
105259 |
105293 |
+ |
(TGA)n |
Simple_repeat |
| scaffold28451 |
105626 |
105652 |
+ |
(CGT)n |
Simple_repeat |
| scaffold28451 |
105885 |
105919 |
+ |
(TGA)n |
Simple_repeat |
| scaffold28451 |
106174 |
106204 |
+ |
(TTAGTA)n |
Simple_repeat |
| scaffold28451 |
107498 |
107555 |
+ |
A-rich |
Low_complexity |
| scaffold28451 |
109366 |
109391 |
+ |
(T)n |
Simple_repeat |
| scaffold28451 |
110722 |
110746 |
+ |
(AAAAAAT)n |
Simple_repeat |
| scaffold28451 |
110747 |
110770 |
+ |
(A)n |
Simple_repeat |
| scaffold28451 |
110771 |
110785 |
+ |
(AAAAAAT)n |
Simple_repeat |