scaffold28650 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold28650 |
166 |
249 |
+ |
G-rich |
Low_complexity |
| scaffold28650 |
1164 |
1300 |
- |
RS813 |
Unspecified |
| scaffold28650 |
1297 |
1510 |
- |
RS18 |
Unspecified |
| scaffold28650 |
1803 |
1877 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold28650 |
2360 |
2507 |
- |
RS5885 |
Unspecified |
| scaffold28650 |
2629 |
2672 |
+ |
(T)n |
Simple_repeat |
| scaffold28650 |
2945 |
3127 |
- |
RS4167 |
Unspecified |
| scaffold28650 |
3961 |
4186 |
- |
RS7125 |
Unspecified |
| scaffold28650 |
4004 |
4316 |
+ |
RS4029 |
Unspecified |
| scaffold28650 |
4095 |
4449 |
- |
RS2283 |
Unspecified |
| scaffold28650 |
4492 |
4532 |
+ |
(TTATA)n |
Simple_repeat |
| scaffold28650 |
4524 |
4602 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
4660 |
4841 |
- |
RS2602 |
Unspecified |
| scaffold28650 |
4801 |
4890 |
- |
RS2602 |
Unspecified |
| scaffold28650 |
4849 |
4973 |
- |
RS4652 |
Unspecified |
| scaffold28650 |
4888 |
4994 |
+ |
RS12971 |
Unspecified |
| scaffold28650 |
5029 |
5243 |
- |
RS4665 |
Unspecified |
| scaffold28650 |
5413 |
5511 |
- |
RS2602 |
Unspecified |
| scaffold28650 |
5532 |
5575 |
- |
RS2602 |
Unspecified |
| scaffold28650 |
5596 |
5636 |
- |
RS2602 |
Unspecified |
| scaffold28650 |
5640 |
5701 |
- |
RS7815 |
Unspecified |
| scaffold28650 |
5722 |
5796 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
5877 |
5909 |
+ |
(AACTTC)n |
Simple_repeat |
| scaffold28650 |
6569 |
6830 |
- |
RS82 |
Unspecified |
| scaffold28650 |
12849 |
12866 |
+ |
(A)n |
Simple_repeat |
| scaffold28650 |
13147 |
13200 |
+ |
(ATCTCT)n |
Simple_repeat |
| scaffold28650 |
14964 |
15014 |
+ |
(TAA)n |
Simple_repeat |
| scaffold28650 |
15371 |
15472 |
+ |
(ATA)n |
Simple_repeat |
| scaffold28650 |
15656 |
15727 |
+ |
POPGY1_LTR |
LTR/Gypsy |
| scaffold28650 |
16305 |
16353 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
17503 |
17553 |
+ |
(CAAGGCA)n |
Simple_repeat |
| scaffold28650 |
18822 |
18856 |
+ |
(C)n |
Simple_repeat |
| scaffold28650 |
18944 |
19040 |
+ |
(CATA)n |
Simple_repeat |
| scaffold28650 |
19040 |
19204 |
+ |
RS840 |
Unspecified |
| scaffold28650 |
19391 |
19424 |
+ |
(GGTGGC)n |
Simple_repeat |
| scaffold28650 |
19425 |
19474 |
+ |
(GGTGAT)n |
Simple_repeat |
| scaffold28650 |
19569 |
19624 |
+ |
(ATT)n |
Simple_repeat |
| scaffold28650 |
20258 |
20520 |
+ |
RS240 |
Unspecified |
| scaffold28650 |
21435 |
21517 |
+ |
(AT)n |
Simple_repeat |
| scaffold28650 |
21491 |
21517 |
+ |
(AT)n |
Simple_repeat |
| scaffold28650 |
21749 |
22208 |
+ |
RS215 |
Unspecified |
| scaffold28650 |
23975 |
24010 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
24509 |
24634 |
- |
PL522 |
Unspecified |
| scaffold28650 |
26315 |
27607 |
- |
RS387 |
Unspecified |
| scaffold28650 |
27726 |
27949 |
+ |
RS17401 |
Unspecified |
| scaffold28650 |
28040 |
28187 |
+ |
RS10234 |
Unspecified |
| scaffold28650 |
29124 |
29260 |
- |
RS29 |
Unspecified |
| scaffold28650 |
29247 |
29345 |
- |
RS873 |
Unspecified |
| scaffold28650 |
29338 |
29382 |
+ |
RS17401 |
Unspecified |
| scaffold28650 |
29465 |
29883 |
+ |
RS6382 |
Unspecified |
| scaffold28650 |
29767 |
29956 |
+ |
RS10558 |
Unspecified |
| scaffold28650 |
29990 |
30658 |
- |
RS497 |
Unspecified |
| scaffold28650 |
30654 |
30750 |
- |
RS1616 |
Unspecified |
| scaffold28650 |
30804 |
31034 |
+ |
RS3928 |
Unspecified |
| scaffold28650 |
30857 |
31057 |
+ |
RS13797 |
Unspecified |
| scaffold28650 |
31123 |
31169 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold28650 |
31914 |
32018 |
- |
RS1763 |
Unspecified |
| scaffold28650 |
32521 |
32547 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
33028 |
33091 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold28650 |
33092 |
33115 |
+ |
(T)n |
Simple_repeat |
| scaffold28650 |
33116 |
33124 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold28650 |
33352 |
33557 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold28650 |
33895 |
34072 |
+ |
RS38 |
Unspecified |
| scaffold28650 |
34878 |
34919 |
+ |
Gypsy-8_ST-I |
LTR/Gypsy |
| scaffold28650 |
35286 |
35308 |
+ |
(T)n |
Simple_repeat |
| scaffold28650 |
35482 |
35556 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold28650 |
35584 |
35675 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold28650 |
35826 |
35867 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
36009 |
36045 |
+ |
(AATGAC)n |
Simple_repeat |
| scaffold28650 |
37246 |
37270 |
+ |
(AGA)n |
Simple_repeat |
| scaffold28650 |
37475 |
38096 |
- |
RS497 |
Unspecified |
| scaffold28650 |
37895 |
38129 |
- |
RS6702 |
Unspecified |
| scaffold28650 |
38181 |
38215 |
+ |
(T)n |
Simple_repeat |
| scaffold28650 |
38608 |
38968 |
- |
RS8 |
Unspecified |
| scaffold28650 |
38975 |
39091 |
+ |
RS2318 |
Unspecified |
| scaffold28650 |
39159 |
39262 |
- |
VLINE10_VV |
LINE/L1 |
| scaffold28650 |
39319 |
39372 |
- |
L1-16_Mad |
LINE/L1 |
| scaffold28650 |
39670 |
39711 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold28650 |
39712 |
39763 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold28650 |
40150 |
40186 |
+ |
(CTT)n |
Simple_repeat |
| scaffold28650 |
41056 |
41215 |
+ |
RS17401 |
Unspecified |
| scaffold28650 |
41688 |
41841 |
- |
RS2164 |
Unspecified |
| scaffold28650 |
43276 |
43300 |
+ |
(A)n |
Simple_repeat |
| scaffold28650 |
43448 |
43505 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
44279 |
44419 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold28650 |
44709 |
44742 |
+ |
(A)n |
Simple_repeat |
| scaffold28650 |
46537 |
46575 |
+ |
(ATATATATA)n |
Simple_repeat |
| scaffold28650 |
46775 |
46951 |
- |
RS179 |
Unspecified |
| scaffold28650 |
47393 |
47525 |
+ |
RS1614 |
Unspecified |
| scaffold28650 |
47555 |
47706 |
- |
RS2164 |
Unspecified |
| scaffold28650 |
49009 |
49025 |
+ |
(TATCATA)n |
Simple_repeat |
| scaffold28650 |
49026 |
49055 |
+ |
(AT)n |
Simple_repeat |
| scaffold28650 |
49168 |
49191 |
+ |
(T)n |
Simple_repeat |
| scaffold28650 |
49397 |
49576 |
- |
RS179 |
Unspecified |
| scaffold28650 |
49861 |
49879 |
+ |
(T)n |
Simple_repeat |
| scaffold28650 |
49921 |
50085 |
- |
RS1903 |
Unspecified |
| scaffold28650 |
50201 |
50980 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold28650 |
50242 |
50316 |
+ |
Copia-32-I_VV |
LTR/Copia |
| scaffold28650 |
50921 |
52693 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold28650 |
51243 |
52470 |
+ |
Copia-32-I_VV |
LTR/Copia |
| scaffold28650 |
53466 |
53499 |
+ |
(CCA)n |
Simple_repeat |
| scaffold28650 |
53549 |
53610 |
+ |
(TTA)n |
Simple_repeat |
| scaffold28650 |
53613 |
53659 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
54424 |
54614 |
+ |
(TAT)n |
Simple_repeat |
| scaffold28650 |
54689 |
54741 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
55192 |
55445 |
- |
RS356 |
Unspecified |
| scaffold28650 |
55446 |
55522 |
- |
RS1362 |
Unspecified |
| scaffold28650 |
55532 |
55606 |
+ |
RS16146 |
Unspecified |
| scaffold28650 |
55624 |
55730 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold28650 |
55926 |
55962 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
56251 |
56824 |
- |
PL8 |
Unspecified |
| scaffold28650 |
57197 |
57230 |
+ |
(TATCTA)n |
Simple_repeat |
| scaffold28650 |
57229 |
57401 |
- |
RS884 |
Unspecified |
| scaffold28650 |
57773 |
57796 |
+ |
(A)n |
Simple_repeat |
| scaffold28650 |
57881 |
57921 |
+ |
(TTATGTT)n |
Simple_repeat |
| scaffold28650 |
58691 |
58713 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold28650 |
58873 |
58956 |
+ |
RS215 |
Unspecified |
| scaffold28650 |
58950 |
59158 |
- |
RS884 |
Unspecified |
| scaffold28650 |
58978 |
59187 |
+ |
RS215 |
Unspecified |
| scaffold28650 |
59453 |
59486 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold28650 |
60164 |
60204 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold28650 |
62335 |
62371 |
+ |
(CA)n |
Simple_repeat |
| scaffold28650 |
64340 |
64393 |
+ |
(TATTTAA)n |
Simple_repeat |
| scaffold28650 |
64950 |
64985 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold28650 |
65000 |
65033 |
+ |
(TAATTAA)n |
Simple_repeat |
| scaffold28650 |
65685 |
65759 |
+ |
A-rich |
Low_complexity |
| scaffold28650 |
66237 |
66306 |
+ |
(TATTA)n |
Simple_repeat |