scaffold3854 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold3854 |
3 |
160 |
+ |
PL219 |
Unspecified |
scaffold3854 |
161 |
190 |
+ |
(CCGG)n |
Simple_repeat |
scaffold3854 |
930 |
1435 |
- |
MEGY-I_MT |
LTR/Gypsy |
scaffold3854 |
1662 |
2114 |
- |
RS1633 |
Unspecified |
scaffold3854 |
3080 |
3201 |
- |
MEGY-I_MT |
LTR/Gypsy |
scaffold3854 |
3391 |
3923 |
- |
PL880 |
Unspecified |
scaffold3854 |
3746 |
4517 |
+ |
RS616 |
Unspecified |
scaffold3854 |
5384 |
5540 |
+ |
RS732 |
Unspecified |
scaffold3854 |
6597 |
6647 |
+ |
(ACAACT)n |
Simple_repeat |
scaffold3854 |
6879 |
7323 |
+ |
(CATCAG)n |
Simple_repeat |
scaffold3854 |
6879 |
6988 |
+ |
(CATCAG)n |
Simple_repeat |
scaffold3854 |
6946 |
7323 |
+ |
PL318 |
Unspecified |
scaffold3854 |
6989 |
7323 |
- |
RS430 |
Unspecified |
scaffold3854 |
7248 |
7336 |
- |
PL575 |
Unspecified |
scaffold3854 |
7325 |
8382 |
+ |
RS51 |
Unspecified |
scaffold3854 |
8351 |
9077 |
+ |
PL522 |
Unspecified |
scaffold3854 |
9305 |
9417 |
- |
ATCopia22I |
LTR/Copia |
scaffold3854 |
9526 |
9593 |
+ |
G-rich |
Low_complexity |
scaffold3854 |
9910 |
9986 |
+ |
HAT-10_Mad |
DNA/hAT-Ac |
scaffold3854 |
10402 |
10444 |
+ |
(TATTA)n |
Simple_repeat |
scaffold3854 |
10584 |
10782 |
+ |
(ATA)n |
Simple_repeat |
scaffold3854 |
10892 |
10943 |
+ |
(ATTAT)n |
Simple_repeat |
scaffold3854 |
11172 |
11240 |
+ |
G-rich |
Low_complexity |
scaffold3854 |
11254 |
11405 |
+ |
(TGT)n |
Simple_repeat |
scaffold3854 |
12601 |
13356 |
+ |
LINE |
LINE(TransposonPSI) |
scaffold3854 |
16853 |
16889 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
16973 |
17029 |
+ |
(TATTT)n |
Simple_repeat |
scaffold3854 |
18284 |
18545 |
- |
RS356 |
Unspecified |
scaffold3854 |
18544 |
18742 |
+ |
RS3298 |
Unspecified |
scaffold3854 |
18843 |
19460 |
+ |
RS189 |
Unspecified |
scaffold3854 |
19345 |
19549 |
- |
RS403 |
Unspecified |
scaffold3854 |
21412 |
22001 |
+ |
PL919 |
Unspecified |
scaffold3854 |
21622 |
22048 |
- |
PL494 |
Unspecified |
scaffold3854 |
22180 |
22243 |
+ |
(GAAGAT)n |
Simple_repeat |
scaffold3854 |
22295 |
22319 |
+ |
(GT)n |
Simple_repeat |
scaffold3854 |
22330 |
22383 |
+ |
(GTA)n |
Simple_repeat |
scaffold3854 |
22368 |
22412 |
+ |
(TATAATG)n |
Simple_repeat |
scaffold3854 |
22601 |
22690 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
25901 |
26165 |
+ |
RS68 |
Unspecified |
scaffold3854 |
25901 |
26098 |
- |
RS757 |
Unspecified |
scaffold3854 |
25933 |
26165 |
+ |
RS13348 |
Unspecified |
scaffold3854 |
26720 |
26744 |
+ |
(TATT)n |
Simple_repeat |
scaffold3854 |
29958 |
30010 |
+ |
(TAAT)n |
Simple_repeat |
scaffold3854 |
30807 |
30848 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
31039 |
31218 |
- |
PL517 |
Unspecified |
scaffold3854 |
31069 |
31193 |
+ |
RS13085 |
Unspecified |
scaffold3854 |
31517 |
32005 |
- |
PL26 |
Unspecified |
scaffold3854 |
32492 |
32542 |
- |
RS3756 |
Unspecified |
scaffold3854 |
32558 |
32847 |
+ |
RS776 |
Unspecified |
scaffold3854 |
32595 |
32847 |
+ |
PL477 |
Unspecified |
scaffold3854 |
33351 |
33395 |
+ |
(A)n |
Simple_repeat |
scaffold3854 |
33710 |
33812 |
+ |
RS7833 |
Unspecified |
scaffold3854 |
34052 |
34145 |
- |
RS16382 |
Unspecified |
scaffold3854 |
34144 |
34314 |
- |
RS38 |
Unspecified |
scaffold3854 |
34317 |
34413 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
34805 |
34827 |
+ |
(AAAT)n |
Simple_repeat |
scaffold3854 |
35279 |
35304 |
+ |
(T)n |
Simple_repeat |
scaffold3854 |
35350 |
35384 |
+ |
(TTAATTT)n |
Simple_repeat |
scaffold3854 |
35688 |
35758 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
36384 |
36407 |
+ |
(A)n |
Simple_repeat |
scaffold3854 |
36475 |
36516 |
+ |
(CATCGT)n |
Simple_repeat |
scaffold3854 |
36597 |
36881 |
+ |
RS4840 |
Unspecified |
scaffold3854 |
37303 |
37347 |
+ |
(AATTAAT)n |
Simple_repeat |
scaffold3854 |
37806 |
37856 |
- |
RS4 |
Unspecified |
scaffold3854 |
37866 |
37905 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
38101 |
38127 |
+ |
(GATTG)n |
Simple_repeat |
scaffold3854 |
38149 |
38175 |
+ |
(T)n |
Simple_repeat |
scaffold3854 |
38569 |
38812 |
- |
RS581 |
Unspecified |
scaffold3854 |
38903 |
38941 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
39013 |
39036 |
+ |
(A)n |
Simple_repeat |
scaffold3854 |
39113 |
39347 |
+ |
RS4 |
Unspecified |
scaffold3854 |
39478 |
39513 |
+ |
(TAA)n |
Simple_repeat |
scaffold3854 |
39710 |
39757 |
- |
STOWAWAY2_ZM |
DNA/TcMar-Stowaway |
scaffold3854 |
40023 |
40145 |
+ |
RS7180 |
Unspecified |
scaffold3854 |
40259 |
40302 |
+ |
GA-rich |
Low_complexity |
scaffold3854 |
40473 |
40533 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
40851 |
41007 |
- |
PL688 |
Unspecified |
scaffold3854 |
41543 |
41660 |
- |
RS1057 |
Unspecified |
scaffold3854 |
41676 |
41760 |
- |
RS202 |
Unspecified |
scaffold3854 |
41759 |
42093 |
+ |
(TAAAC)n |
Simple_repeat |
scaffold3854 |
42054 |
42093 |
+ |
(TAAAC)n |
Simple_repeat |
scaffold3854 |
42176 |
42252 |
+ |
(TTAAT)n |
Simple_repeat |
scaffold3854 |
42550 |
42588 |
+ |
(ATTAAC)n |
Simple_repeat |
scaffold3854 |
42691 |
42948 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
scaffold3854 |
43032 |
43069 |
+ |
(TTATT)n |
Simple_repeat |
scaffold3854 |
43624 |
43738 |
+ |
RS7180 |
Unspecified |
scaffold3854 |
44255 |
44747 |
+ |
RS3469 |
Unspecified |
scaffold3854 |
44650 |
44837 |
- |
RS7356 |
Unspecified |
scaffold3854 |
44859 |
44966 |
- |
RS1967 |
Unspecified |
scaffold3854 |
45154 |
45273 |
+ |
PL329 |
Unspecified |
scaffold3854 |
45272 |
45335 |
- |
RS562 |
Unspecified |
scaffold3854 |
45965 |
46083 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
scaffold3854 |
46223 |
46243 |
+ |
(A)n |
Simple_repeat |
scaffold3854 |
46314 |
46410 |
+ |
RS13740 |
Unspecified |
scaffold3854 |
47767 |
47869 |
+ |
RS7833 |
Unspecified |
scaffold3854 |
48099 |
48295 |
- |
PL798 |
Unspecified |
scaffold3854 |
48345 |
48543 |
- |
RS1233 |
Unspecified |
scaffold3854 |
48567 |
48765 |
+ |
RS12339 |
Unspecified |
scaffold3854 |
48784 |
48801 |
+ |
(A)n |
Simple_repeat |
scaffold3854 |
49083 |
49360 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
49083 |
49178 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
49145 |
49360 |
+ |
RS880 |
Unspecified |
scaffold3854 |
49377 |
49717 |
- |
PL798 |
Unspecified |
scaffold3854 |
49883 |
49904 |
+ |
(A)n |
Simple_repeat |
scaffold3854 |
50327 |
50343 |
+ |
(A)n |
Simple_repeat |
scaffold3854 |
50954 |
51010 |
+ |
(CATC)n |
Simple_repeat |
scaffold3854 |
51370 |
51415 |
+ |
A-rich |
Low_complexity |
scaffold3854 |
52115 |
52825 |
+ |
RS228 |
Unspecified |
scaffold3854 |
52208 |
52825 |
- |
PL459 |
Unspecified |
scaffold3854 |
53060 |
53163 |
+ |
(TGAAC)n |
Simple_repeat |
scaffold3854 |
53596 |
53698 |
+ |
RS7833 |
Unspecified |
scaffold3854 |
54340 |
54779 |
- |
PL654 |
Unspecified |
scaffold3854 |
54386 |
54775 |
- |
RS1010 |
Unspecified |
scaffold3854 |
55125 |
55381 |
+ |
RS1 |
Unspecified |
scaffold3854 |
58091 |
58127 |
+ |
(GAAATTG)n |
Simple_repeat |
scaffold3854 |
58152 |
58172 |
+ |
(CTAA)n |
Simple_repeat |
scaffold3854 |
58669 |
58704 |
+ |
(T)n |
Simple_repeat |
scaffold3854 |
58926 |
58964 |
+ |
(A)n |
Simple_repeat |
scaffold3854 |
59724 |
59903 |
+ |
RS114 |
Unspecified |
scaffold3854 |
60142 |
60248 |
- |
PL110 |
Unspecified |
scaffold3854 |
60250 |
60276 |
+ |
(T)n |
Simple_repeat |
scaffold3854 |
60361 |
60869 |
+ |
RS15674 |
Unspecified |
scaffold3854 |
60886 |
60915 |
+ |
(T)n |
Simple_repeat |
scaffold3854 |
61000 |
61508 |
+ |
RS15674 |
Unspecified |