scaffold38968 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold38968 |
1 |
398 |
- |
PL44 |
Unspecified |
| scaffold38968 |
161 |
213 |
+ |
(CAAGCTA)n |
Simple_repeat |
| scaffold38968 |
371 |
1778 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold38968 |
2005 |
3342 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold38968 |
4015 |
4050 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold38968 |
4399 |
4420 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
5024 |
5048 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
5049 |
5186 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold38968 |
5401 |
5747 |
- |
RS1166 |
Unspecified |
| scaffold38968 |
6548 |
7073 |
+ |
PL831 |
Unspecified |
| scaffold38968 |
7074 |
7777 |
- |
RS775 |
Unspecified |
| scaffold38968 |
7654 |
8025 |
- |
RS703 |
Unspecified |
| scaffold38968 |
8481 |
8749 |
+ |
RS1984 |
Unspecified |
| scaffold38968 |
8763 |
8911 |
- |
RS3173 |
Unspecified |
| scaffold38968 |
8779 |
9041 |
- |
RS4546 |
Unspecified |
| scaffold38968 |
9476 |
9650 |
+ |
RS2711 |
Unspecified |
| scaffold38968 |
9911 |
9945 |
+ |
(CCAAT)n |
Simple_repeat |
| scaffold38968 |
11299 |
11464 |
+ |
G-rich |
Low_complexity |
| scaffold38968 |
11615 |
11756 |
+ |
G-rich |
Low_complexity |
| scaffold38968 |
12347 |
12375 |
+ |
(AGA)n |
Simple_repeat |
| scaffold38968 |
15230 |
15266 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
15412 |
15440 |
+ |
(ACCGG)n |
Simple_repeat |
| scaffold38968 |
15484 |
15560 |
+ |
(GACCG)n |
Simple_repeat |
| scaffold38968 |
15671 |
15730 |
+ |
(TCCGG)n |
Simple_repeat |
| scaffold38968 |
15798 |
15840 |
+ |
RS3146 |
Unspecified |
| scaffold38968 |
15827 |
15940 |
+ |
RS3146 |
Unspecified |
| scaffold38968 |
17018 |
17042 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
17298 |
17317 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
17757 |
17773 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
17909 |
17975 |
+ |
(ATA)n |
Simple_repeat |
| scaffold38968 |
18148 |
18204 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
18344 |
18510 |
+ |
RS356 |
Unspecified |
| scaffold38968 |
18564 |
18612 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
18608 |
18740 |
+ |
RS356 |
Unspecified |
| scaffold38968 |
19602 |
19621 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
21237 |
21271 |
+ |
(TCACTC)n |
Simple_repeat |
| scaffold38968 |
23265 |
23284 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
23473 |
23497 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
24623 |
24655 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
28242 |
28269 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
28242 |
28728 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
28265 |
28728 |
- |
PL400 |
Unspecified |
| scaffold38968 |
28995 |
29543 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold38968 |
29537 |
30463 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold38968 |
34895 |
34929 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
35012 |
35080 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
35085 |
35668 |
+ |
PL301 |
Unspecified |
| scaffold38968 |
36161 |
36205 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
36638 |
36895 |
+ |
RS6346 |
Unspecified |
| scaffold38968 |
36979 |
37006 |
+ |
(AAATA)n |
Simple_repeat |
| scaffold38968 |
37538 |
38029 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold38968 |
37621 |
37958 |
+ |
Copia-46_GM-I |
LTR/Copia |
| scaffold38968 |
38062 |
38845 |
+ |
Copia-46_GM-I |
LTR/Copia |
| scaffold38968 |
39241 |
40877 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold38968 |
41364 |
41430 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold38968 |
43061 |
43085 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
45224 |
45250 |
+ |
(AT)n |
Simple_repeat |
| scaffold38968 |
45447 |
45486 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold38968 |
45613 |
45676 |
+ |
(AATC)n |
Simple_repeat |
| scaffold38968 |
45802 |
45891 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
47611 |
47739 |
+ |
RS14541 |
Unspecified |
| scaffold38968 |
47785 |
47950 |
- |
RS152 |
Unspecified |
| scaffold38968 |
48586 |
48625 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold38968 |
49340 |
49392 |
+ |
(ATCTT)n |
Simple_repeat |
| scaffold38968 |
49658 |
49705 |
+ |
(TA)n |
Simple_repeat |
| scaffold38968 |
49843 |
50044 |
+ |
RS1793 |
Unspecified |
| scaffold38968 |
50028 |
50166 |
+ |
RS6120 |
Unspecified |
| scaffold38968 |
50043 |
50268 |
- |
RS7727 |
Unspecified |
| scaffold38968 |
50450 |
50480 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
51563 |
51598 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold38968 |
52407 |
52610 |
- |
RS12715 |
Unspecified |
| scaffold38968 |
54210 |
54262 |
+ |
(AACACAA)n |
Simple_repeat |
| scaffold38968 |
54969 |
55180 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
55260 |
55291 |
+ |
(TAAAA)n |
Simple_repeat |
| scaffold38968 |
55436 |
55469 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
57200 |
57228 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
57465 |
57511 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
57971 |
58003 |
+ |
(AAGAAA)n |
Simple_repeat |
| scaffold38968 |
58834 |
58928 |
+ |
RS463 |
Unspecified |
| scaffold38968 |
59098 |
59151 |
+ |
RS1350 |
Unspecified |
| scaffold38968 |
60613 |
60896 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold38968 |
61023 |
61114 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold38968 |
61044 |
61123 |
+ |
LTR-1_SMo-LTR |
LTR |
| scaffold38968 |
61117 |
61296 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold38968 |
61298 |
61392 |
+ |
RS14776 |
Unspecified |
| scaffold38968 |
62050 |
62098 |
- |
RS1045 |
Unspecified |
| scaffold38968 |
62246 |
62348 |
- |
LINE1E_MT |
LINE/L1 |
| scaffold38968 |
62733 |
62758 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
65119 |
65236 |
- |
RS6533 |
Unspecified |
| scaffold38968 |
65711 |
65844 |
+ |
RS10478 |
Unspecified |
| scaffold38968 |
66043 |
66153 |
+ |
RS13968 |
Unspecified |
| scaffold38968 |
66757 |
66877 |
+ |
RS18018 |
Unspecified |
| scaffold38968 |
67091 |
67165 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold38968 |
67333 |
67591 |
+ |
RS13894 |
Unspecified |
| scaffold38968 |
68171 |
68382 |
+ |
RS12359 |
Unspecified |
| scaffold38968 |
68712 |
68758 |
+ |
(TTAAGTT)n |
Simple_repeat |
| scaffold38968 |
70645 |
70752 |
+ |
RS15926 |
Unspecified |
| scaffold38968 |
70760 |
71139 |
+ |
RS12726 |
Unspecified |
| scaffold38968 |
71204 |
71355 |
+ |
RS11028 |
Unspecified |
| scaffold38968 |
71366 |
71540 |
+ |
RS12222 |
Unspecified |
| scaffold38968 |
71565 |
71587 |
+ |
(A)n |
Simple_repeat |
| scaffold38968 |
71657 |
71688 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
71920 |
72105 |
- |
RS5051 |
Unspecified |
| scaffold38968 |
72002 |
72371 |
+ |
RS6131 |
Unspecified |
| scaffold38968 |
72249 |
72420 |
+ |
RS9169 |
Unspecified |
| scaffold38968 |
72439 |
72599 |
+ |
RS8768 |
Unspecified |
| scaffold38968 |
72623 |
72710 |
+ |
RS2491 |
Unspecified |
| scaffold38968 |
72772 |
73130 |
+ |
RS2491 |
Unspecified |
| scaffold38968 |
73221 |
73247 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold38968 |
73304 |
73398 |
+ |
RS1733 |
Unspecified |
| scaffold38968 |
73397 |
73513 |
+ |
RS43 |
Unspecified |
| scaffold38968 |
73519 |
73593 |
+ |
RS3371 |
Unspecified |
| scaffold38968 |
73717 |
73975 |
+ |
RS3371 |
Unspecified |
| scaffold38968 |
73988 |
74065 |
+ |
RS3371 |
Unspecified |
| scaffold38968 |
74140 |
74252 |
+ |
RS3371 |
Unspecified |
| scaffold38968 |
74346 |
74412 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
74547 |
74588 |
+ |
(CCACCT)n |
Simple_repeat |
| scaffold38968 |
74605 |
74638 |
+ |
(CACCTG)n |
Simple_repeat |
| scaffold38968 |
74605 |
74723 |
+ |
(CACCTG)n |
Simple_repeat |
| scaffold38968 |
74624 |
74723 |
+ |
RS5646 |
Unspecified |
| scaffold38968 |
74823 |
75098 |
+ |
RS7889 |
Unspecified |
| scaffold38968 |
75141 |
75538 |
+ |
RS3309 |
Unspecified |
| scaffold38968 |
75563 |
75813 |
+ |
(TCGTATG)n |
Simple_repeat |
| scaffold38968 |
75563 |
75599 |
+ |
(TCGTATG)n |
Simple_repeat |
| scaffold38968 |
75584 |
75813 |
+ |
RS6019 |
Unspecified |
| scaffold38968 |
75842 |
76058 |
+ |
RS4039 |
Unspecified |
| scaffold38968 |
76108 |
76209 |
- |
RS10602 |
Unspecified |
| scaffold38968 |
76204 |
76313 |
+ |
RS13461 |
Unspecified |
| scaffold38968 |
76329 |
76475 |
+ |
RS2678 |
Unspecified |
| scaffold38968 |
76385 |
76503 |
- |
RS3254 |
Unspecified |
| scaffold38968 |
77767 |
77984 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold38968 |
78283 |
78337 |
+ |
RS4333 |
Unspecified |
| scaffold38968 |
78365 |
78726 |
- |
RS8 |
Unspecified |
| scaffold38968 |
79187 |
79467 |
+ |
Copia-5_ST-I |
LTR/Copia |
| scaffold38968 |
79560 |
79579 |
+ |
(T)n |
Simple_repeat |
| scaffold38968 |
79584 |
79843 |
+ |
RS13894 |
Unspecified |
| scaffold38968 |
80322 |
80533 |
+ |
RS12359 |
Unspecified |
| scaffold38968 |
80863 |
80909 |
+ |
(TTAAGTT)n |
Simple_repeat |
| scaffold38968 |
82786 |
82893 |
+ |
RS15926 |
Unspecified |
| scaffold38968 |
82901 |
83280 |
+ |
RS12726 |
Unspecified |
| scaffold38968 |
83345 |
83496 |
+ |
RS11028 |
Unspecified |
| scaffold38968 |
83507 |
83681 |
+ |
RS12222 |
Unspecified |
| scaffold38968 |
84072 |
84257 |
- |
RS5051 |
Unspecified |
| scaffold38968 |
84154 |
84519 |
+ |
RS6131 |
Unspecified |
| scaffold38968 |
84397 |
84568 |
+ |
RS9169 |
Unspecified |
| scaffold38968 |
84577 |
84879 |
+ |
RS2491 |
Unspecified |
| scaffold38968 |
84860 |
84930 |
+ |
RS1733 |
Unspecified |
| scaffold38968 |
84931 |
85044 |
+ |
RS43 |
Unspecified |
| scaffold38968 |
85044 |
85124 |
+ |
RS1733 |
Unspecified |
| scaffold38968 |
85208 |
85260 |
+ |
RS1733 |
Unspecified |
| scaffold38968 |
85239 |
85473 |
+ |
RS3371 |
Unspecified |
| scaffold38968 |
85534 |
85608 |
+ |
RS3371 |
Unspecified |
| scaffold38968 |
85613 |
85725 |
+ |
RS3371 |
Unspecified |
| scaffold38968 |
85821 |
85878 |
+ |
A-rich |
Low_complexity |
| scaffold38968 |
86028 |
86074 |
+ |
RS8733 |
Unspecified |
| scaffold38968 |
86079 |
86120 |
+ |
(CCACCT)n |
Simple_repeat |
| scaffold38968 |
86137 |
86255 |
+ |
(CACCTG)n |
Simple_repeat |
| scaffold38968 |
86137 |
86170 |
+ |
(CACCTG)n |
Simple_repeat |
| scaffold38968 |
86156 |
86255 |
+ |
RS5646 |
Unspecified |
| scaffold38968 |
86355 |
86630 |
+ |
RS7889 |
Unspecified |
| scaffold38968 |
86673 |
87070 |
+ |
RS3309 |
Unspecified |
| scaffold38968 |
86885 |
87300 |
+ |
RS2042 |
Unspecified |
| scaffold38968 |
87102 |
87331 |
+ |
RS6019 |
Unspecified |
| scaffold38968 |
87360 |
87621 |
+ |
RS4039 |
Unspecified |
| scaffold38968 |
87668 |
87769 |
- |
RS10602 |
Unspecified |
| scaffold38968 |
87764 |
87873 |
+ |
RS13461 |
Unspecified |
| scaffold38968 |
87889 |
88035 |
+ |
RS2678 |
Unspecified |
| scaffold38968 |
87945 |
88063 |
- |
RS3254 |
Unspecified |
| scaffold38968 |
88417 |
88473 |
+ |
(TATTTT)n |
Simple_repeat |