scaffold4520 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold4520 |
2 |
282 |
- |
PL188 |
Unspecified |
| scaffold4520 |
287 |
336 |
+ |
(TTG)n |
Simple_repeat |
| scaffold4520 |
315 |
344 |
+ |
(TAG)n |
Simple_repeat |
| scaffold4520 |
345 |
404 |
+ |
(TAC)n |
Simple_repeat |
| scaffold4520 |
584 |
614 |
+ |
(TCA)n |
Simple_repeat |
| scaffold4520 |
778 |
806 |
+ |
(TAA)n |
Simple_repeat |
| scaffold4520 |
976 |
1119 |
+ |
(TAA)n |
Simple_repeat |
| scaffold4520 |
1148 |
1217 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold4520 |
4646 |
4683 |
+ |
GA-rich |
Low_complexity |
| scaffold4520 |
5016 |
5193 |
- |
RS38 |
Unspecified |
| scaffold4520 |
5293 |
5329 |
+ |
(TTCGT)n |
Simple_repeat |
| scaffold4520 |
5868 |
6112 |
+ |
RS4 |
Unspecified |
| scaffold4520 |
6220 |
6246 |
+ |
(AACCG)n |
Simple_repeat |
| scaffold4520 |
6318 |
6380 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold4520 |
6699 |
6792 |
- |
PL754 |
Unspecified |
| scaffold4520 |
6791 |
7201 |
- |
PL807 |
Unspecified |
| scaffold4520 |
7613 |
7798 |
+ |
A-rich |
Low_complexity |
| scaffold4520 |
7613 |
7644 |
+ |
A-rich |
Low_complexity |
| scaffold4520 |
7639 |
7798 |
- |
RS79 |
Unspecified |
| scaffold4520 |
8472 |
8632 |
- |
RS79 |
Unspecified |
| scaffold4520 |
8706 |
8730 |
+ |
(A)n |
Simple_repeat |
| scaffold4520 |
9149 |
9176 |
+ |
(T)n |
Simple_repeat |
| scaffold4520 |
9292 |
9331 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold4520 |
9878 |
9921 |
+ |
(TAATAT)n |
Simple_repeat |
| scaffold4520 |
10238 |
10291 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold4520 |
10810 |
11335 |
+ |
PL753 |
Unspecified |
| scaffold4520 |
11204 |
11357 |
- |
PL753 |
Unspecified |
| scaffold4520 |
11599 |
11631 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold4520 |
11910 |
12251 |
+ |
RS11059 |
Unspecified |
| scaffold4520 |
12236 |
12390 |
+ |
RS7501 |
Unspecified |
| scaffold4520 |
12891 |
12967 |
- |
RS7284 |
Unspecified |
| scaffold4520 |
13034 |
13332 |
+ |
RS13446 |
Unspecified |
| scaffold4520 |
13370 |
13489 |
+ |
RS6514 |
Unspecified |
| scaffold4520 |
13652 |
14497 |
+ |
RS7284 |
Unspecified |
| scaffold4520 |
14529 |
14654 |
+ |
RS14028 |
Unspecified |
| scaffold4520 |
16485 |
16529 |
+ |
A-rich |
Low_complexity |
| scaffold4520 |
21202 |
21368 |
+ |
PL560 |
Unspecified |
| scaffold4520 |
21354 |
21562 |
- |
Copia-78_PT-I |
LTR/Copia |
| scaffold4520 |
21762 |
21998 |
- |
Copia48-PTR_I-int |
LTR/Copia |
| scaffold4520 |
23588 |
23733 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold4520 |
24063 |
24517 |
+ |
(ATCATA)n |
Simple_repeat |
| scaffold4520 |
24492 |
24517 |
+ |
(ATCATA)n |
Simple_repeat |
| scaffold4520 |
24492 |
24629 |
+ |
(ATCATA)n |
Simple_repeat |
| scaffold4520 |
24513 |
24629 |
+ |
RS112 |
Unspecified |
| scaffold4520 |
24702 |
24774 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold4520 |
25015 |
25047 |
+ |
RS112 |
Unspecified |
| scaffold4520 |
25029 |
25644 |
- |
RS6081 |
Unspecified |
| scaffold4520 |
25458 |
25670 |
- |
RS2104 |
Unspecified |
| scaffold4520 |
25668 |
25851 |
+ |
RS11995 |
Unspecified |
| scaffold4520 |
25874 |
26046 |
+ |
RS10126 |
Unspecified |
| scaffold4520 |
26109 |
26461 |
+ |
RS6132 |
Unspecified |
| scaffold4520 |
26651 |
26711 |
+ |
A-rich |
Low_complexity |
| scaffold4520 |
27718 |
27982 |
+ |
RS82 |
Unspecified |
| scaffold4520 |
28180 |
28342 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4520 |
28667 |
28702 |
+ |
(GACAC)n |
Simple_repeat |
| scaffold4520 |
29217 |
29245 |
+ |
(GACAC)n |
Simple_repeat |
| scaffold4520 |
29598 |
29635 |
+ |
A-rich |
Low_complexity |
| scaffold4520 |
29849 |
30296 |
+ |
RS6221 |
Unspecified |
| scaffold4520 |
29878 |
30015 |
+ |
PL752 |
Unspecified |
| scaffold4520 |
30393 |
30493 |
+ |
RS14392 |
Unspecified |
| scaffold4520 |
30832 |
30881 |
+ |
(TCAAGT)n |
Simple_repeat |
| scaffold4520 |
31898 |
32549 |
- |
ATRE1_I-int |
LTR/Copia |
| scaffold4520 |
32765 |
32992 |
- |
ATRE1_I-int |
LTR/Copia |
| scaffold4520 |
34345 |
34400 |
+ |
(GTTCA)n |
Simple_repeat |
| scaffold4520 |
34502 |
34565 |
+ |
(TTCAA)n |
Simple_repeat |
| scaffold4520 |
36586 |
36645 |
+ |
(TTCAA)n |
Simple_repeat |
| scaffold4520 |
36975 |
37413 |
+ |
RS9853 |
Unspecified |
| scaffold4520 |
37411 |
37595 |
+ |
RS11995 |
Unspecified |
| scaffold4520 |
40420 |
40444 |
+ |
(A)n |
Simple_repeat |
| scaffold4520 |
40801 |
40917 |
- |
RS152 |
Unspecified |
| scaffold4520 |
41630 |
41665 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold4520 |
41796 |
41830 |
+ |
(AAGTCA)n |
Simple_repeat |
| scaffold4520 |
43799 |
43853 |
+ |
(GCAGA)n |
Simple_repeat |
| scaffold4520 |
44020 |
44085 |
+ |
A-rich |
Low_complexity |
| scaffold4520 |
44504 |
44749 |
+ |
RS3649 |
Unspecified |
| scaffold4520 |
44536 |
44749 |
- |
RS761 |
Unspecified |
| scaffold4520 |
44766 |
44800 |
+ |
(AAGTCA)n |
Simple_repeat |
| scaffold4520 |
45450 |
45463 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold4520 |
45464 |
45506 |
+ |
(TAA)n |
Simple_repeat |
| scaffold4520 |
45507 |
45523 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold4520 |
46502 |
46562 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold4520 |
47561 |
48326 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold4520 |
48252 |
48326 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold4520 |
48327 |
49091 |
+ |
(TCGTAT)n |
Simple_repeat |
| scaffold4520 |
48327 |
48440 |
+ |
(TCGTAT)n |
Simple_repeat |
| scaffold4520 |
48397 |
49091 |
+ |
PL969 |
Unspecified |
| scaffold4520 |
49401 |
49492 |
+ |
A-rich |
Low_complexity |
| scaffold4520 |
49609 |
49671 |
+ |
A-rich |
Low_complexity |
| scaffold4520 |
49872 |
49908 |
+ |
(TAT)n |
Simple_repeat |
| scaffold4520 |
51313 |
51340 |
+ |
(AGG)n |
Simple_repeat |
| scaffold4520 |
51358 |
52770 |
+ |
RS260 |
Unspecified |
| scaffold4520 |
53214 |
53235 |
+ |
(TGAA)n |
Simple_repeat |
| scaffold4520 |
54071 |
54616 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold4520 |
55034 |
55375 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold4520 |
55376 |
55899 |
+ |
Copia7-ZM_I-int |
LTR/Copia |
| scaffold4520 |
55914 |
56179 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold4520 |
56433 |
56876 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold4520 |
57092 |
57889 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold4520 |
57863 |
57980 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold4520 |
58024 |
58291 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold4520 |
58311 |
58598 |
+ |
Copia25-PTR_I-int |
LTR/Copia |